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2744647c75
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Merge pull request #4594 from akohlmey/collected-small-changes
Collected small changes
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2025-05-19 22:13:37 -04:00 |
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b3402eaae8
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Merge pull request #4424 from jtavenner-dev/kmc
add fix neighbor/swap
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2025-05-19 20:57:00 -04:00 |
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b9b59bd23c
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small clarifications and corrections. Sync with current state of affairs
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2025-05-19 11:31:42 -04:00 |
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2968a62937
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continue refactoring for bio force field and water moldel discussions
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2025-05-17 23:30:18 -04:00 |
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e393b9803b
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add information about the OPC model to the TIP4P howto
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2025-05-17 22:41:42 -04:00 |
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63ee449dc1
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reformulate description of force components
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2025-05-17 21:15:48 -04:00 |
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5fd4d6bb87
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remove directionCorrection and update docs for compute pair/local and compute bond/local
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2025-05-15 23:15:59 -04:00 |
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2bcac9efba
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fix spelling issue
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2025-05-12 12:13:05 -04:00 |
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ef89edc4c6
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Additional edits
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2025-05-09 14:53:27 -06:00 |
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bb62f46404
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Merge branch 'kmc' of https://github.com/jtavenner-dev/lammps into kmc
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2025-05-09 14:27:05 -06:00 |
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17da04f07b
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Cleaned up language errors
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2025-05-09 14:25:08 -06:00 |
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6436cc87b7
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Corrected inconsistent voro-ID compute references and examples
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2025-05-09 14:23:03 -06:00 |
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60fe08c328
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clarify and rewrap
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2025-05-07 15:47:35 -04:00 |
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7c2c9ea286
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add missing versionadded tag
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2025-05-07 02:00:40 -04:00 |
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c0a41bd638
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Merge remote-tracking branch 'github/develop' into collected-small-changes
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2025-05-06 15:06:43 -04:00 |
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c1e9adbd80
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Merge pull request #4574 from talinke/develop
New Fix for GJF Langevin Dynamics
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2025-05-06 13:24:06 -04:00 |
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48df0448df
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spelling
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2025-05-06 12:05:12 -04:00 |
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2d22092078
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additional info for pair style lj/smooth from Aidan
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2025-05-06 12:00:55 -04:00 |
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afcb97aaf2
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address spelling issues
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2025-05-05 20:22:00 -04:00 |
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fbfe1e6a7c
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Merge remote-tracking branch 'github/develop' into collected-small-changes
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2025-05-05 20:13:42 -04:00 |
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a528b88d8a
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Merge branch 'update-docs' of github.com:navlalli/lammps-qtpie into collected-small-changes
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2025-05-05 20:13:23 -04:00 |
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a1cd18e4cf
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Merge pull request #4522 from willzunker/mdr-dev
MDR contact model updates: radius update and damping
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2025-05-05 20:07:36 -04:00 |
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3b17ea5363
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Merge pull request #4556 from Colvars/colvars-update
Update Colvars library to version 2025-04-18
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2025-05-05 20:03:27 -04:00 |
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37221c080b
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Add self-citation
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2025-05-02 13:52:17 +01:00 |
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55a13efad0
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small update
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2025-05-02 00:30:22 -04:00 |
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a388bd38ee
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add LAMMPS-GUI screenshot image
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2025-05-02 00:21:41 -04:00 |
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2ab7eda64a
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improve warning and explanation about too short communication cutoff
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2025-04-30 16:46:22 -04:00 |
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cba479bf6e
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Update Colvars library to version 2025-04-18
The following is a list of pull requests relevant to LAMMPS in the Colvars repository since 2024-08-06:
- 752 New tool poisson_integrator_conv
https://github.com/Colvars/colvars/pull/752 (@jhenin)
- 733 Custom grids for all biases
https://github.com/Colvars/colvars/pull/733 (@giacomofiorin, @jhenin)
- 776 Avoid error in acos and asin with fast-math
https://github.com/Colvars/colvars/pull/776 (@jhenin)
- 773 fix: fix the clang build test failure of OPES
https://github.com/Colvars/colvars/pull/773 (@HanatoK)
- 768 fix: clamp the input values of asin and acos in case of fast math on aarch64
https://github.com/Colvars/colvars/pull/768 (@HanatoK)
- 761 Add debug code for the Jacobi failure
https://github.com/Colvars/colvars/pull/761 (@HanatoK)
- 759 min_image fix; Saves long runs from crashes;
https://github.com/Colvars/colvars/pull/759 (@PolyachenkoYA)
- 757 Fix MSVC OpenMP issue
https://github.com/Colvars/colvars/pull/757 (@HanatoK)
- 755 Fix indentation of 'Init CVC' message in standard output
https://github.com/Colvars/colvars/pull/755 (@jhenin)
- 750 Optimize and simplify the calculation of dihedral gradients
https://github.com/Colvars/colvars/pull/750 (@HanatoK)
- 749 Add references to new Colvars paper
https://github.com/Colvars/colvars/pull/749 (@jhenin, @giacomofiorin)
- 740 Report the specific C++ standard at init time, stop warning about C++97/03
https://github.com/Colvars/colvars/pull/740 (@giacomofiorin)
- 731 Improve detection of hard/mathematical boundaries
https://github.com/Colvars/colvars/pull/731 (@giacomofiorin)
- 729 Optimize the fit gradients
https://github.com/Colvars/colvars/pull/729 (@HanatoK, @jhenin)
- 728 Fix undefined behavior when getting the current working directory from std::filesystem
https://github.com/Colvars/colvars/pull/728 (@giacomofiorin)
- 727 Add patchversion scripting command
https://github.com/Colvars/colvars/pull/727 (@giacomofiorin)
- 724 Fix gradients and metric functions of distanceDir
https://github.com/Colvars/colvars/pull/724 (@giacomofiorin)
- 715 Add missing rotation in orientation component
https://github.com/Colvars/colvars/pull/715 (@giacomofiorin)
- 713 fix: try to solve #87 for non-scala components
https://github.com/Colvars/colvars/pull/713 (@HanatoK)
- 709 Implementation of OPES in Colvars
https://github.com/Colvars/colvars/pull/709 (@HanatoK, @giacomofiorin, @jhenin)
- 706 BUGFIX for Segmentation fault in colvarbias_meta::calc_energy() with useGrids off
https://github.com/Colvars/colvars/pull/706 (@alphataubio)
- 570 enable use of CVs defined by PyTorch neural network models
https://github.com/Colvars/colvars/pull/570 (@zwpku, @giacomofiorin, @HanatoK, @jhenin)
Authors: @alphataubio, @EzryStIago, @giacomofiorin, @HanatoK, @jhenin, @PolyachenkoYA, @zwpku
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2025-04-30 15:32:30 -04:00 |
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def38bf0f3
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Updated fix langevin algorithm citation
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2025-04-29 15:03:49 -07:00 |
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2fa9cc7ae1
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correct
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2025-04-29 17:52:48 -04:00 |
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0ce5d68455
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Merge branch 'develop' into talinke/develop
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2025-04-29 17:20:15 -04:00 |
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1062a8fb3a
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add deprecation warning to fix langevin and document it
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2025-04-29 17:20:04 -04:00 |
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332006923d
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Name change: langevin/gjf to gjf
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2025-04-29 12:00:06 -07:00 |
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2fc7d287d4
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Merge branch 'develop' into collected-small-fixes
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2025-04-28 22:27:32 -04:00 |
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d4867ab55e
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add false positives
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2025-04-28 22:22:47 -04:00 |
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2927b08792
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correct reference
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2025-04-28 22:20:57 -04:00 |
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4a3c08576f
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small formal updates
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2025-04-28 22:19:14 -04:00 |
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c886fff624
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Merge branch 'develop' into gcmc-eatom
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2025-04-28 17:55:48 -06:00 |
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75d3d79fca
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open available error URLs with double click or from context menu
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2025-04-28 18:25:40 -04:00 |
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fc0788f61c
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Styling
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2025-04-28 13:18:33 -07:00 |
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b5f3660101
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Merge branch 'lammps:develop' into develop
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2025-04-28 13:16:24 -07:00 |
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11f6b3483b
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Updated documentation, updated log files
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2025-04-28 13:02:47 -07:00 |
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7151f261a0
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address sphinx formatting issue due to added paragraph
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2025-04-27 10:04:41 -04:00 |
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1a1f4b1a82
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correct reference
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2025-04-26 02:17:54 -04:00 |
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4897fbb210
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Merge branch 'develop' into collected-small-fixes
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2025-04-26 00:50:58 -04:00 |
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40d8e1b95f
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Merge pull request #4535 from Bibobu/plot_forces_tool
Adding python tool to plot tabulated forces
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2025-04-26 00:50:32 -04:00 |
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4b2163666c
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Merge pull request #4545 from jtclemm/rheo
Small patches to various packages
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2025-04-26 00:46:49 -04:00 |
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7102cc2588
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use bold font for column titles
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2025-04-25 20:31:16 -04:00 |
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3b9ddf7a1f
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spelling
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2025-04-25 14:59:42 -04:00 |
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cab78b2c0d
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correct docs related to adding explicit Coulomb interactions
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2025-04-25 14:15:01 -04:00 |
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