Commit Graph

12177 Commits

Author SHA1 Message Date
90797c7b62 document that also molecules from the molecule command can be visualized 2025-04-10 11:51:13 -04:00
83c785740b improve phrasing 2025-04-10 10:49:27 -04:00
f2bf0d0a8b add optional create_atoms group keyword to add new atoms to a custom group 2025-04-10 05:36:26 -04:00
d1f452fcb6 fix whitespace issues 2025-04-09 17:45:54 -04:00
e9695df0e8 Provide some additional explanations for the "boost neigh_modify one" error 2025-04-09 17:29:34 -04:00
585565edb9 corrected initialization of damp_type, error checks, doc changes, example script updates 2025-04-08 20:33:28 -04:00
586d24f5ef whitespace 2025-04-07 23:02:00 -04:00
7643c901eb cleaned mdr damping and updated velocity damping for mdr use 2025-04-07 22:57:29 -04:00
4ce473a649 Merge branch 'lammps:develop' into fix-adapt-dihedral 2025-04-07 19:54:18 +02:00
2b38b6d1c0 extract() implementation for dihedral class2 2025-04-07 11:35:20 +02:00
e93709d34e extract() implementation for dihedral helix 2025-04-07 11:20:53 +02:00
7655a4cb84 extract() implementation for dihedral multi/harmonic 2025-04-07 09:30:44 +02:00
e956e5ccda extract() implementation for dihedral charmm and charmmfsw 2025-04-07 09:24:44 +02:00
55964c1233 extract() implementation for dihedral cosine squared restricted 2025-04-07 09:11:42 +02:00
27ac8c0ea1 extract() implementation for dihedral opls 2025-04-07 09:05:42 +02:00
cdea2737c7 remove CMAKE_TUNE_FLAGS 2025-04-06 07:06:20 -04:00
ece0df7f7e Small modification of Tools.rst to include plot_forces + typo 2025-04-06 10:37:23 +02:00
30bbbafd9d Cleaning up MDR files 2025-04-04 09:57:43 -06:00
996faf7a94 update documentation 2025-04-04 17:11:30 +02:00
5086c639e2 improve docs and use dtype as parameter name to avoid confusion with type 2025-04-04 10:41:35 -04:00
f4f0a22ee1 improve valgind suppression information and format 2025-04-04 10:19:38 -04:00
d06bfbf180 add missing index 2025-04-04 03:41:22 -04:00
91283d98cc allow to set https_proxy via preferences if not set via environment variable 2025-04-03 22:27:57 -04:00
f447a0476c discuss using a proxy with geturl, e.g. on a cluster compute node 2025-04-03 18:45:14 -04:00
65992f7ba2 mention LAMMPS tutorial files download support 2025-04-03 18:44:40 -04:00
999e6d95d4 list post_constructor methods and modernize description 2025-04-03 13:47:53 -04:00
91e4cbb564 update a couple more pending version tags 2025-04-02 14:20:57 -04:00
0043bca33d Merge branch 'develop' into next_release 2025-04-02 14:11:45 -04:00
cb8550465e Merge pull request #4507 from navlalli/qeqr
Add fix qeq/rel/reaxff
2025-04-02 13:19:55 -04:00
8df9f3404b Merge pull request #4467 from evoyiatzis/patch-2
extend fix adapt to treat improper angles
2025-04-02 12:18:40 -04:00
92321f4cad Merge pull request #4521 from stanmoore1/kk_update_4.6.0
Update Kokkos library in LAMMPS to v4.6.0
2025-04-02 11:30:17 -04:00
9f7653dd37 Merge pull request #4519 from fxcoudert/extxyz2
Add extended XYZ dump style extxyz
2025-04-02 10:59:18 -04:00
8defe0e798 Merge pull request #4482 from rbberger/dihedral_multi_harmonic_kokkos
add dihedral multi/harmonic/kk
2025-04-01 21:37:51 -04:00
d51017c878 Set pending version tags to 2Apr2025 2025-04-01 21:30:53 -04:00
5bd3218372 update version strings 2025-04-01 21:29:59 -04:00
5933eca83f Merge pull request #4515 from akohlmey/collected-small-fixes
Collected small fixes and updates
2025-04-01 21:16:16 -04:00
5371aa8670 Merge pull request #4335 from jrgissing/bond/react-molmap_option
Bond/react: molmap option
2025-04-01 21:14:19 -04:00
b0ca9ed0d4 enable lj/cubic for fix adapt 2025-04-01 16:19:37 +02:00
db8dae3300 enable lj/gromacs for fix adapt 2025-04-01 15:36:44 +02:00
c99ae613de enable lj96 for fix adapt 2025-04-01 11:34:11 +02:00
b8aaa8d60f modified doc to include mdr damping model 2025-03-31 22:55:42 -04:00
bba860f959 Update docs for KOKKOS update 2025-03-31 12:36:40 -06:00
677e8dd681 documentation fixes 2025-03-30 23:35:45 -04:00
935e323d08 Merge branch 'develop' into bond/react-molmap_option 2025-03-30 23:27:50 -04:00
578b1cf936 fix typo
Co-authored-by: Shern Tee <shernren@gmail.com>
2025-03-30 01:32:02 -04:00
367dd4635b Merge remote-tracking branch 'github/develop' into qeqr 2025-03-29 18:41:36 -04:00
fc9d7bc181 rename fix qeqr/reaxff to fix qeq/rel/reaxff 2025-03-29 18:40:47 -04:00
2396668965 Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-03-29 16:31:17 -04:00
285baf27b5 Merge pull request #4518 from akohlmey/file-formats
Add a general description of common file formats in LAMMPS
2025-03-29 16:30:31 -04:00
7ff9ee51e5 small tweaks 2025-03-29 15:56:34 -04:00