Commit Graph

13899 Commits

Author SHA1 Message Date
7d07baa8ad Better load balance fix_qeq_reax_kokkos for half neigh list 2017-12-21 11:07:51 -07:00
46fe0a968b Fix compiler warnings in atom_vec_hybrid_kokkos 2017-12-18 14:09:39 -07:00
00a9672524 Fix issue in fix_qeq_reax_kokkos, can't call child function from base constructor 2017-12-18 13:58:37 -07:00
193252275f A few more tweaks to charge history in fix_qeq_reax_kokkos 2017-12-12 09:54:28 -07:00
5968850306 Fix broken charge history in fix_qeq_reax_kokkos 2017-12-12 09:20:09 -07:00
d029cb9002 Merge pull request #743 from stanmoore1/kk_yukawa_fix
Fix compile error in pair_yukawa_kokkos
2017-12-07 10:31:04 -07:00
3e99d1a83a Add pair yukawa/kk to Section_commands 2017-12-07 09:06:33 -07:00
c4e83be533 Fix compile error in pair_yukawa_kokkos 2017-12-07 08:42:17 -07:00
d7e5d60f90 Merge pull request #738 from rbberger/pylammps_thermo_style_fix
PyLammps bugfix to support custom thermo output with vector element addressing
2017-12-07 08:25:01 -07:00
5179efd2bb Merge pull request #741 from stanmoore1/kk_compile
Reduce Kokkos compile dependencies
2017-12-07 08:24:22 -07:00
abb2fe5be7 Merge pull request #740 from stanmoore1/improve_reax
Improve ReaxFF
2017-12-07 08:23:47 -07:00
bae45e2493 Merge pull request #737 from akohlmey/collected-bugfixes
Collected bugfixes and small updates for next patch
2017-12-07 08:23:06 -07:00
73d509f339 Merge pull request #735 from jaapkroe/extep
Add ExTeP pair style
2017-12-07 08:22:34 -07:00
fa0c28b717 Merge pull request #731 from Pakketeretet2/pair-yukawa-kk
Added a KOKKOS-enabled Yukawa pair style.
2017-12-07 08:21:20 -07:00
bc3a84b480 Merge pull request #727 from lammps/fix-gcmc-examples
new example scripts for fix gcmc
2017-12-07 08:19:56 -07:00
f64544a5fe Move instantiation of MemoryKokkos class 2017-12-05 08:34:24 -07:00
fc742eb2ef Remove outdated elastic constants 2017-12-05 16:23:20 +01:00
1baecc689e Merge pull request #3 from stanmoore1/kk_yukawa
Add pair_yukawa_kokkos to Install.sh and minor cleanup.

These changes look fine. Sorry for the tabs, I must have forgotten about those.
2017-12-04 14:16:53 -05:00
d916416cc5 Add pair_yukawa_kokkos to Install.sh and minor cleanup 2017-12-04 12:02:32 -07:00
2813923f15 Add multiple inheritance to pair_multi_lucy_rx_kokkos 2017-12-04 10:43:41 -07:00
4a3a6b4455 no need to include library.o in the LAMMPS executable 2017-12-03 19:37:42 -05:00
5d9a6c1fe2 Add checks to Kokkos Install.sh so that files aren't unnecessarily recompiled 2017-12-01 16:06:50 -07:00
e7f97728c3 disable disruptive debug output 2017-12-01 17:14:11 -05:00
58ed92d905 one more file that doesn't require to include accelerator_kokkos.h 2017-12-01 16:45:22 -05:00
14aa036f36 add missing header files to USER-INTEL package 2017-12-01 15:53:02 -05:00
42e03da70c Remove redundant #include in input.cpp 2017-12-01 13:16:35 -07:00
5d2e097b27 Need dynamic cast for multiple inheritance 2017-12-01 12:53:40 -07:00
da51a8a0bb Add missing header files to GPU package 2017-12-01 12:13:14 -07:00
80dffb27e2 Add missing header files 2017-12-01 11:33:42 -07:00
5b33f153f4 Add newline to memory_kokkos.h 2017-12-01 10:33:47 -07:00
31eb12920c Use multiple inheritance to remove accelerator_kokkos.h out of region.h and kspace.h 2017-12-01 10:18:22 -07:00
31f2ca1e4c Use multiple inheritance to remove accelerator_kokkos.h out of pair.h 2017-12-01 09:51:40 -07:00
15a3364c2c Make memory_kokkos its own class 2017-12-01 09:13:31 -07:00
c3aa705d04 Improve performance of pair_reaxc, this change is safe because the non-bonded i-loop doesn't include ghost atoms; this optimization is already included in the USER-OMP version 2017-11-30 09:22:32 -07:00
8c2d38c7e9 Remove non-existent function in reaxc_forces_omp 2017-11-30 09:13:03 -07:00
e3b961b622 Improve performance of PairReaxCKokkos 2017-11-30 09:10:39 -07:00
319508bd29 fix scoping ambiguity issue that confuses nvcc 2017-11-30 10:56:58 -05:00
6f7bd78ea2 Fixes issue #701
PyLammps now supports thermo_style entries such as c_msd[4]
2017-11-29 01:06:44 -05:00
5647522906 various small cosmetic adjustments to increase conformance with LAMMPS programming conventions 2017-11-28 12:34:23 -05:00
e4b14213b4 delete old log files. new log files are approved by @athomps 2017-11-28 11:35:49 -05:00
fa6fc947f2 fix issues in FixNeighHistory and FixNeighHistoryOMP reported in https://sourceforge.net/p/lammps/mailman/message/36138319/
This supersedes and closes PR #734
2017-11-28 11:28:15 -05:00
e1189381e0 correct documentation for create_atoms rotate
This closes #736
2017-11-28 11:19:19 -05:00
39d24ab7eb ExTeP potential file header update 2017-11-27 21:25:23 +01:00
5770a20e2c added ExTeP to USER-MISC 2017-11-27 21:16:51 +01:00
83ec9815fe Merge pull request #733 from pastewka/17_dump_nc3
BUG: Proper handling of bigint data in NetCDF dump style. Affects LAMMPS version compiled with LAMMPS_BIGBIG.
2017-11-27 11:07:58 -07:00
90ee52296b Merge remote-tracking branch 'andeplane/fix_ave_chunk_bug' into collected-bugfixes
this closes PR #732
2017-11-27 11:45:09 -05:00
f02eb225c6 Merge branch '17_dump_nc3' of github.com:pastewka/lammps into 17_dump_nc3 2017-11-26 22:39:03 +01:00
a111cf640a BUG: Proper handling of bigint data. Corrects behavior when compiled with LAMMPS_BIGBIG. 2017-11-26 22:35:56 +01:00
e755a8339d BUG: openfile is called multiple times, second call stopped code with 'at keyword requires use of append yes' 2017-11-26 22:31:47 +01:00
f7f6a15ac0 MAINT: Removed superfluous code. 2017-11-26 22:31:47 +01:00