Commit Graph

37983 Commits

Author SHA1 Message Date
80ef8656e8 remove some more dead code to silence compiler warnings 2024-01-20 23:11:20 -05:00
35a6bf0cac silence compiler warning 2024-01-20 22:59:23 -05:00
930a717f5e silence CMake warning about FindCUDA.cmake being obsolete 2024-01-20 22:59:13 -05:00
88e384037f make sure both NEB class constructors are consistently initialized 2024-01-20 14:49:57 -05:00
5a67c4d704 add check for another kind of broken references in ReST files 2024-01-20 10:53:41 -05:00
52e76502f4 formatting update, correct references 2024-01-20 10:53:04 -05:00
d6d8a2cd8a correctly determine when to create "rootworld" communicator 2024-01-20 10:52:20 -05:00
0d1234e63a modernize by replacing Modify::find_compute() with Modify::get_compute_by_id() 2024-01-19 15:16:23 -05:00
ae2c17d3ad remove unused code 2024-01-19 15:01:53 -05:00
0efff49bdf capitalize constants 2024-01-19 13:00:41 -05:00
39d21473a0 various coding style updates 2024-01-19 13:00:29 -05:00
e0967af6e8 move fix wall style enumerator to header and import from there for consistency 2024-01-19 12:58:48 -05:00
3b4b7eb919 there is no support for dipoles in fix npt/cauchy 2024-01-19 09:48:27 -05:00
f73cb28ed4 modernize and apply clang-format 2024-01-19 05:54:54 -05:00
e28f93dca4 programming style updates 2024-01-19 00:03:13 -05:00
4015d1bb39 initialize static string buffers to empty strings 2024-01-19 00:02:50 -05:00
3ae4779c7f convert defines into static constexpr 2024-01-18 23:59:33 -05:00
48e83b2298 remove unused parameter and silence compiler warnings 2024-01-18 22:55:02 -05:00
991663feff Avoid (harmless) errors when shutting down the GPU. 2024-01-18 22:42:32 -05:00
54794a45de Merge pull request #4030 from alphataubio/alphataubio-charmmfsw-kk
Kokkos charmmfsw pair and dihedral styles
2024-01-18 18:10:12 -05:00
4b561d5f8e fix typo 2024-01-18 17:06:58 -05:00
fb9ae23516 revert more general doc changes. those are moved to a separate branch for further edits. 2024-01-18 16:46:47 -05:00
01973ddf23 Merge branch 'develop' into alphataubio-charmmfsw-kk 2024-01-18 16:37:27 -05:00
af60285a3f Merge pull request #4048 from akohlmey/lepton_updates
Update LEPTON styles for more flexibility
2024-01-18 16:34:38 -05:00
0ad1d29c4d Merge pull request #4047 from stanmoore1/kk_fix_exchange_bug
Fix bug in some Kokkos fixes' unpack exchange on device
2024-01-18 14:58:09 -05:00
fe1b568241 Merge pull request #4046 from akohlmey/molecule-dipole
Add support for Dipoles section to molecule files
2024-01-18 14:57:01 -05:00
14abc184f8 Merge pull request #4040 from alphataubio/cgdna
[CG-DNA examples/util] fixed indentations and ported python 2 code to python 3
2024-01-18 14:55:41 -05:00
bf9b8606ef Merge pull request #3905 from jrgissing/bond_react_fixes_aug23
Assorted bond/react fixes
2024-01-18 14:41:01 -05:00
3b3ab4207b Merge pull request #4042 from akohlmey/fmtlib-10.2.1
Update embedded fmtlib code to version 10.2.1
2024-01-18 14:33:28 -05:00
425421c1ca fix typo, cut-n-paste error, and add clarification 2024-01-18 14:32:40 -05:00
90a79d9a4b change unit test to include expressions with constant force or potential 2024-01-18 11:06:52 -05:00
73194764e9 add optional keywords "auto_offset" and "no_offset" to bond/angle style lepton 2024-01-18 11:05:52 -05:00
f3c5002634 Merge branch 'lammps:develop' into bond_react_fixes_aug23 2024-01-18 10:00:00 -05:00
57db9be64f add support for Lepton expressions with constant force or constant potential 2024-01-18 09:46:23 -05:00
5304c43fef add test for exceptions and evaluation of compiled expressions 2024-01-18 04:32:20 -05:00
2d8f622c6a Merge pull request #4039 from akohlmey/collected-small-changes
Collected small changes and fixes
2024-01-17 19:28:48 -05:00
189b08b4a5 Fix bug in some Kokkos fixes' unpack exchange on device 2024-01-17 14:47:59 -07:00
9c4597b5e9 more GPU package cleanup from Trung 2024-01-17 16:12:36 -05:00
6e2df52c8f remove dead code and align better with LAMMPS programming style 2024-01-17 16:09:16 -05:00
16d4811592 move fix bond/history back to src folder 2024-01-17 15:48:03 -05:00
d5da47cf33 Revert "adjust a few more fix styles for fix bond/history being optional"
This reverts commit 497c48bd80.
2024-01-17 15:47:11 -05:00
b47ad7acf4 Revert "make delete_bonds command code compatible with BPM package not being installed"
This reverts commit 715b030bd6.
2024-01-17 15:46:03 -05:00
f78f596d9d document using enumerator constants in Atom and AtomVec classes 2024-01-17 14:58:09 -05:00
ff0d18114e silence compiler warnings 2024-01-17 13:25:46 -05:00
f23ba8fbad make certain temporary test files are deleted 2024-01-16 17:54:08 -05:00
f5cbef8b12 fix typo 2024-01-16 15:57:42 -05:00
deb8416630 update tests for echoing the title line of molecule files 2024-01-16 13:53:07 -05:00
b6d27dfb96 add versionadded tag 2024-01-16 13:06:00 -05:00
103d8cadb9 add unit tests for dipoles in molecule files 2024-01-16 13:05:49 -05:00
9312ce0beb store and print title line of molecule 2024-01-16 12:20:02 -05:00