Commit Graph

31759 Commits

Author SHA1 Message Date
88f7e4c7b6 After running "make fix-whitespace" 2022-08-22 21:41:12 -05:00
4d8dc03a3f Edits to fix.rst and additions for missing styles 2022-08-22 21:13:59 -05:00
bc3a673e89 Merge branch 'lammps:develop' into doc-fixes 2022-08-22 20:01:28 -05:00
b96398e5e9 Minor edits to doc pages for echo group if 2022-08-21 22:19:30 -05:00
2259947d52 Edits to documentation files for consistency and math 2022-08-19 23:49:44 -05:00
de0b7bf737 Tweaks to documentation to make it more consistent and machine-readable 2022-08-19 19:25:15 -05:00
66bbfa67dc Merge pull request #3406 from Vikingat-RAGE/develop
Fix vim syntax to handle switching color themes
2022-08-19 11:24:21 -04:00
d32b303a82 Finished edits on computes (whew!); builds with no errors or warnings 2022-08-19 00:25:06 -05:00
1e5ca42dfa small update 2022-08-18 21:48:09 -04:00
d03f0a6716 More cosmetic edits to documentation 2022-08-18 19:25:06 -05:00
8a9cd4b2b5 Merge branch 'lammps:develop' into doc-fixes 2022-08-18 17:48:47 -05:00
1b979be939 Merge pull request #3392 from akohlmey/minimize-neighbor-check
Update test for neighbor list settings during minimization
2022-08-17 20:55:23 -04:00
c3f57037e6 Merge pull request #3391 from akohlmey/refactor-find-xxx
Continued refactoring of internal APIs and their use
2022-08-17 19:37:20 -04:00
f199e45762 Merge pull request #3244 from akohlmey/shake-with-minimize
Enable use of fix shake or fix rattle during minimization
2022-08-17 18:02:40 -04:00
93c7dab931 Fixed filetype.vim 2022-08-17 14:08:38 -07:00
d1e0af7ef5 discuss why one would want to use check = no during minimization 2022-08-17 16:00:00 -04:00
8e4b79dfa8 Merge branch 'refactor-find-xxx' of github.com:akohlmey/lammps into refactor-find-xxx
# Conflicts:
#	src/fix_temp_rescale.cpp
2022-08-17 15:52:02 -04:00
da0bc7e0e9 whitespace 2022-08-17 15:48:47 -04:00
92c9614429 Merge branch 'develop' into refactor-find-xxx
# Conflicts:
#	src/atom.h
#	src/compute_centroid_stress_atom.cpp
2022-08-17 15:48:26 -04:00
20b87d3cd4 Merge pull request #3398 from hammondkd/cite-reminders
Cite reminders
2022-08-17 15:40:35 -04:00
ca4f7b6579 Merge pull request #3399 from akohlmey/lookup-molecules
Refactor access to molecule templates
2022-08-17 15:29:11 -04:00
daa6b78c43 update documentation 2022-08-17 15:22:59 -04:00
7879a4f837 Fix vim syntax to handle switching color themes
- filetype.vim includes *.in files as lammps input files
- syntax.vim defines the syntax links rather than just creating them
  once
2022-08-17 12:03:10 -07:00
6e8db537c9 Merge pull request #3400 from vpalkar/unit-tests
Adding unit tests and improving errors in region commands
2022-08-17 13:19:27 -04:00
9c211d836c Merge pull request #3403 from crackboy88/improve-errors
improve error messages
2022-08-17 12:21:40 -04:00
8d2fba9197 modernize fixes langevin, press/berendsen, temp/berendsen, temp/rescale 2022-08-17 06:57:38 -04:00
6aa1d1fb95 Edited compute reduce and reduce/chunk to make easier to parse and more consistent 2022-08-16 23:26:13 -05:00
8dbe981a1a modernize fix vector 2022-08-16 22:56:29 -04:00
fe8a7a3799 Math replacements; code-block LAMMPS; clarity and parsing-friendly edits 2022-08-16 20:29:12 -05:00
180e0125ce Improved fix wall/reflect changes 2022-08-17 08:38:43 +08:00
301d379db8 Merge branch 'develop' into refactor-find-xxx 2022-08-16 18:05:33 -04:00
0cac041ad4 avoid segfault when using a custom format with too many format specifiers 2022-08-16 18:03:07 -04:00
d8706ab0cb Merge branch 'unit-tests' of github.com:vpalkar/lammps into unit-tests 2022-08-16 17:03:11 -04:00
5cdc09d9c7 updated region_intersect and region_union to use utils missing cmd args 2022-08-16 16:59:12 -04:00
559ced9869 updated error messages and test for region.cpp 2022-08-16 16:52:19 -04:00
0b047ba22b improved error messages in fix_addforce,fix_indent,fix_setforce,fix_temp_rescale,fix_wall_reflect and thermo.cpp 2022-08-16 20:33:22 +08:00
953f63bb8f More math and code-block edits 2022-08-15 23:48:30 -05:00
288dd03ee2 Merge branch 'lammps:develop' into doc-fixes 2022-08-15 21:13:32 -05:00
3f9daa8608 whitespace fixes 2022-08-15 21:48:01 -04:00
b4cdf5ce23 Updates to fix code-block at top, math, and anything else I found 2022-08-15 20:17:36 -05:00
bec86f3f04 added some death tests and more readable code for some error messages 2022-08-15 16:16:48 -04:00
43726c020a Merge pull request #3394 from crackboy88/improve-errors
Improve errors
2022-08-15 15:47:47 -04:00
000c63a7ce improved error messages for some more region commands 2022-08-15 15:12:26 -04:00
c1f81eb640 improved error messages in a bunch of region commands 2022-08-15 15:04:18 -04:00
8c83e1f047 Merge pull request #3401 from efposadac/modernize-legacy
Modernize legacy API calls
2022-08-15 14:56:57 -04:00
eb600c7b9d Merge branch 'lammps:develop' into modernize-legacy 2022-08-15 10:55:59 -04:00
d9320c61bb adding test for fix wall/region 2022-08-15 02:13:05 -04:00
bf8ff3a8ca improved error messages for region cylinder 2022-08-14 23:27:55 -04:00
d047053473 improved some error messages in compute_msd,fix_indent and fix_nh.cpp 2022-08-15 10:51:29 +08:00
29998775f0 Added a test for region clyinder with an open face 2022-08-14 22:48:42 -04:00