Commit Graph

28861 Commits

Author SHA1 Message Date
8aaae8e6ee Fix count issue 2022-01-07 15:22:53 -07:00
40c140e56e Improve PairReaxFFKokkos neigh list algorithm 2022-01-07 14:48:07 -07:00
878557dd48 Merge pull request #3079 from akohlmey/next_patch_release
Step version strings for the next patch release
patch_7Jan2022
2022-01-07 11:31:23 -05:00
e3dd2908d9 Step version strings for the next patch release 2022-01-06 19:42:45 -05:00
b300a93b67 Merge pull request #3073 from akohlmey/fmtlib-8.1-update
Update included fmtlib to version 8.1.1
2022-01-06 19:40:00 -05:00
1f924e9fc1 Merge pull request #3071 from akohlmey/collected-small-changes
Collected small changes and bug fixes
2022-01-06 19:22:30 -05:00
9c9bc4790b update to fmtlib-8.1.1 2022-01-06 18:31:15 -05:00
8e0622d523 Merge pull request #3046 from donatas-surblys/centroid-stress-constraint-rigid
Centroid atomic stress for shake, rattle and rigid/small
2022-01-05 12:36:27 -05:00
3ff2f53ead add citations to centroid/stress/atom 2022-01-05 18:45:35 +09:00
e5416a9fee update documentation for new centroid stress for shake and rigid/small 2022-01-05 19:02:25 +09:00
4aba9e9bb6 cosmetic and whitespace changes 2022-01-04 23:08:32 -05:00
40abc0886c adjust for double precision floating point 2022-01-04 23:02:17 -05:00
d0f203127d create missing de,df table elements from linear extrapolation 2022-01-04 23:01:38 -05:00
12420181e1 Merge pull request #3072 from akohlmey/refactor-data-file-parsing
Modernize parsing of topology data sections of data files
2022-01-04 13:21:14 -05:00
8ae68d71dd Merge pull request #3062 from Luthaf/netcdf-standard
Follow Amber NetCDF standard more closely
2022-01-04 13:02:50 -05:00
ede7787741 Refactor Atom::data_bodies() 2022-01-04 11:56:56 -05:00
f557bf6e20 implement suggestion by @rbberger 2022-01-04 11:37:32 -05:00
fd3884d705 disable centroid stress for non-small rigid fixes 2022-01-04 18:09:49 +09:00
1225b609d8 disable centroid stress for fix rigid/small/omp 2022-01-04 17:43:32 +09:00
6a73fc0472 refactor reading last line of potential file code to be more efficient 2022-01-03 21:35:26 -05:00
8439f87b76 make consistent with other reference 2022-01-03 18:26:56 -05:00
de404d1ed8 Merge branch 'update_doc_file' of github.com:jddietz/lammps into collected-small-changes 2022-01-03 18:26:01 -05:00
49412ce0f7 implement workaround windows from https://github.com/fmtlib/fmt/issues/2691
this also reverts commit c5a7f4c3ac
and thus results in consistent crt behavior on windows
2022-01-03 18:01:33 -05:00
a9a568aefa Updated references for pair_nm.rst 2022-01-03 11:50:04 -10:00
7e92809288 Merge pull request #3069 from Vsevak/fix-hip-ffast-math
Fix HIP Makefile under lib/gpu
2022-01-03 11:37:55 -05:00
b8ed590bde Merge pull request #3068 from ndtrung81/gpu-lib-makefiles
Updates to Makefiles under lib/gpu
2022-01-03 10:48:45 -05:00
90726ca088 explain that the computed force in python pair is force/r same as in Pair:single() 2022-01-03 10:12:51 -05:00
8c95a8db23 Incorporate bugfixes from issue #3074, a few additional cleanups 2022-01-03 10:11:03 -05:00
c5a7f4c3ac fmtlib now uses UCRT instead of MSVCRT. add library to avoid linker failure 2022-01-02 15:24:04 -05:00
bb1c12d22b import fmtlib v8.1.0 2022-01-02 13:42:27 -05:00
f3c5593c50 correct code example 2022-01-01 16:40:54 -05:00
e5c517c8d8 silence compiler warnings 2022-01-01 00:21:14 -05:00
9efa2369dd join wrapped strings 2021-12-31 14:34:24 -05:00
c17a183816 do error checking already in read_data code 2021-12-31 14:34:09 -05:00
863de683ee do not shadow "natoms" class member 2021-12-31 13:43:56 -05:00
6d9764e140 add missing advance of buffer pointer 2021-12-31 00:14:52 -05:00
ca3be99e77 correct function prototypes 2021-12-30 23:48:42 -05:00
e6e9aed385 modernize/correct parsing for Bonus and Bodies sections 2021-12-30 22:58:14 -05:00
8d53cd1e5d modernize parsing of Velocities section of data files 2021-12-30 19:14:09 -05:00
def1072f0f port data_atom() changes to KOKKOS 2021-12-30 18:42:15 -05:00
7f2b505df3 apply utils overloads 2021-12-30 11:14:48 -05:00
cf9429dc68 implement overloads so that utils::*numeric() functions can be safely used with std::string() 2021-12-30 11:03:37 -05:00
64d6a2fd1f modernize parsing of the Atoms section 2021-12-29 20:24:27 -05:00
c97483c46f modernize parsing of the Masses section in data files 2021-12-29 19:36:18 -05:00
78df5c2258 modernize parsing of Bonds/Angles/Dihedrals/Impropers section of data files 2021-12-29 19:18:42 -05:00
27a6c63aeb correct format string for Error::one() 2021-12-29 16:18:48 -05:00
88b42503f9 address segfault issue with fix nve/gpu when group is not "all" 2021-12-29 14:06:22 -05:00
14e5474174 restore obsolete compilation settings similar to parallel makefile 2021-12-27 20:31:42 -05:00
053d915fc4 drop -ffast-math for HIP also when compiling with CMake 2021-12-27 20:14:30 -05:00
b781410f92 Delete fast-math flag from Makefile.hip for AMD platforms 2021-12-28 03:11:02 +03:00