Commit Graph

34311 Commits

Author SHA1 Message Date
91ef7c22fa reindent 2023-01-25 15:29:13 -05:00
16354d0262 fix out-of-bounds access 2023-01-25 15:28:22 -05:00
fcea881d3e programming style 2023-01-25 06:16:48 -05:00
c87b4c5887 must initialize msmeamflag 2023-01-25 06:16:36 -05:00
862c7180bb Enclose create/destroy in msmeam conditional 2023-01-24 21:11:33 -07:00
647172bfe1 Clean up 2023-01-24 14:56:27 -07:00
d0a614b1fe Remove unnecessary conditional 2023-01-24 14:53:00 -07:00
ab83b31ce2 Document changes 2023-01-24 13:05:47 -07:00
8f554a3b1c Clean up 2023-01-24 12:30:18 -07:00
f1ae427ee0 Format and organize pair MEAM 2023-01-24 12:04:47 -07:00
de32abeace Merge with Kokkos updates 2023-01-24 11:21:58 -07:00
f3f8613437 Debug final stage of dens setup 2023-01-24 11:21:04 -07:00
533af97d8e Format and clean Kokkos MEAM 2023-01-24 11:02:14 -07:00
a82b028b72 Finish porting MS-MEAM to Kokkos; obtain agreement in forces and energies 2023-01-23 19:43:31 -07:00
1812cf6264 Begin kokkos implementation up to calc_rho1 function 2023-01-23 15:10:59 -07:00
3430ffbe5a Merge branch 'msmeam-adr' of https://github.com/rohskopf/lammps into msmeam-adr 2023-01-20 13:58:37 -07:00
bb2553b079 Set comm size outside constructor 2023-01-20 13:02:50 -07:00
973190fef6 Merge remote-tracking branch 'upstream/develop' into msmeam-adr 2023-01-19 19:26:49 -07:00
3eb22313ed Default nvcc wrapper 2023-01-19 19:26:42 -07:00
7cf9b30943 Confirm agreement with old meam example 2023-01-17 21:27:21 -07:00
f98a2357fd Merge remote-tracking branch 'upstream/develop' into msmeam-adr 2023-01-17 21:18:58 -07:00
ff9ccc96bf Clean up 2023-01-17 21:11:07 -07:00
d14f070bef Fix segfault with normal meam 2023-01-17 20:46:54 -07:00
0a5f97c327 Merge pull request #3596 from tomswinburne/energy_spacing_neb
NEB routine to target equal energy difference between knots
2023-01-16 14:20:43 -05:00
665b877063 Update msmeam example and clean up code 2023-01-16 07:37:32 -07:00
503c51c070 whitespace 2023-01-16 08:37:52 -05:00
a8d0f94a5a small clean up 2023-01-16 14:21:31 +01:00
07da78dfe8 Documentation update after suggestions of @athomps 2023-01-16 14:12:52 +01:00
e1a8a70a6c replace individual *verbose* / *terse* keywords with *verbosity* setting 2023-01-14 07:06:26 -05:00
102934565e Merge branch 'develop' into energy_spacing_neb 2023-01-14 06:57:48 -05:00
24fec6bdbd Merge pull request #3592 from akohlmey/collected-small-changes
Collected small changes and fixes for the next patch release
2023-01-14 00:44:48 -05:00
c415385ab4 Merge pull request #3594 from akohlmey/abc-fire-alternative
Alternative implementation of ABC-FIRE
2023-01-13 21:28:25 -05:00
acb59c8b74 Merge pull request #3597 from lammps/dump-grid-dimension
Add ITEM: DIMENSION to dump grid output
2023-01-13 17:42:35 -05:00
882f155d94 whitespace 2023-01-13 14:51:40 -05:00
50cc866081 sync with stable branch 2023-01-13 14:47:51 -05:00
651e95654c more details on dump snapshot header values 2023-01-13 12:34:05 -07:00
652a8804e2 enable and apply clang-format 2023-01-13 12:31:47 -05:00
9169d88090 add ITEM: DIMENSION to dump grid src/doc 2023-01-13 09:42:11 -07:00
8e138161af add more thorough checks on Fortran and MPI support for Fortran.
also works around issue with GNU Fortran 12 and later
2023-01-13 11:02:24 -05:00
a1f5d8420a compile test for coupling to the LAMMPS library via fortran, check if it runs 2023-01-13 06:26:06 -05:00
aa2d2509d8 plug memory leaks in coupling examples 2023-01-13 05:40:28 -05:00
b03e9609ce synchronize API with library.h, zero struct on allocation, determine exception support at runtime. 2023-01-13 05:30:49 -05:00
59a9161435 add bugfix for plugin wrapper of library interface from Stan 2023-01-13 03:54:22 -05:00
a155ef8695 add MEAM example to fire minimizer examples 2023-01-12 23:26:30 -05:00
b97a0c62e4 whitespace 2023-01-12 23:00:52 -05:00
f27c7a9135 rework neb docs to use .. math:: and :math: in sphinx 2023-01-12 22:58:16 -05:00
03838f06f8 Zero arrays in dens setup to prevent forces from growing each timestep 2023-01-12 19:28:10 -07:00
7ac611b671 enable and apply clang-format 2023-01-12 18:51:45 -05:00
a6234ab3be move enum to .cpp file and away from header 2023-01-12 18:50:34 -05:00
692bdaea37 reorder 2023-01-12 18:28:01 -05:00