Commit Graph

1420 Commits

Author SHA1 Message Date
8f554a3b1c Clean up 2023-01-24 12:30:18 -07:00
973190fef6 Merge remote-tracking branch 'upstream/develop' into msmeam-adr 2023-01-19 19:26:49 -07:00
3eb22313ed Default nvcc wrapper 2023-01-19 19:26:42 -07:00
fbbe66c8bd Merge branch 'develop' into lepton-package 2023-01-06 17:53:23 -05:00
3f496905d6 Merge branch 'develop' into lepton-package 2023-01-06 00:44:28 -05:00
01d9033e2d Merge branch 'develop' into collected-small-changes 2023-01-05 23:36:45 -05:00
3bf527d070 Merge pull request #3579 from akohlmey/linalg-in-cpp
Convert linalg library from Fortran to C++
2023-01-05 21:16:06 -05:00
821b34de78 Merge pull request #3585 from yury-lysogorskiy/feature/pace-extrapolation-kokkos
Feature/pace extrapolation kokkos
2023-01-05 19:15:49 -05:00
5cbe303af4 Merge branch 'develop' into collected-small-changes 2023-01-04 07:28:03 -05:00
d9abc3fcc0 update CUDA Toolkit / GPU compatibility lists and GPU package compilation settings 2023-01-03 11:56:44 -05:00
e033cebcdd update lammps-user-pace version and checksum 2023-01-03 14:30:04 +01:00
396d577f40 port DPD exclusions corrections to GPU package 2023-01-02 12:04:10 -05:00
57790ef35f remove fortran sources and update README with pointer to the conversion package 2022-12-31 16:59:25 -05:00
49eb9ca5fd revert to using the unions. looks nicer and passes the tests. 2022-12-29 19:10:15 -05:00
6e60131f14 Windows portability changes 2022-12-28 20:53:53 -05:00
dba3eb0cf7 make AWPMD compatible with MSVC and c++-linalg on Windows 2022-12-28 17:39:38 -05:00
57713cf9a3 remove redundant comments from generated C++ files. clean up with clang-format. 2022-12-28 16:44:38 -05:00
f157ba2389 add some f2c runtime functions, remove exception, avoid name conflict with libgfortran 2022-12-28 16:00:38 -05:00
1e8b2ad5a0 whitespace fixes 2022-12-28 13:48:43 -05:00
a894cbfbb7 update linalg README 2022-12-28 13:48:43 -05:00
119fae3b8c remove unused code 2022-12-28 13:48:43 -05:00
52fb2e8156 don't need to link to Fortran runtime with linalg anymore 2022-12-28 13:48:36 -05:00
c5a87f75d6 convert linalg library from Fortran to C++ 2022-12-28 13:18:38 -05:00
7cceabe5bd ILAENV function does not use IPARAM2STAGE anymore 2022-12-28 12:17:49 -05:00
6f0216af75 ILAENV function does not use IPARAM2STAGE anymore 2022-12-28 12:17:19 -05:00
67156420d4 avoid out-of-range read 2022-12-28 00:19:59 -05:00
50a370c4a5 use memcpy instead of union to avoid pointer aliasing 2022-12-27 21:39:35 -05:00
9f15ad4795 simplify by using a custom constructor 2022-12-27 18:26:29 -05:00
246b25e2ed silence compiler warning 2022-12-27 17:43:39 -05:00
c63f1647fb work around pointer aliasing issue with JIT enabled 2022-12-27 17:43:31 -05:00
efc2e96a9e explicitly share Lepton settings between lepton and colvars folders 2022-12-27 17:42:59 -05:00
2a3d1a1ba5 import JIT settings to colvars library makefile 2022-12-27 15:16:58 -05:00
4f4f7be9c8 must provide list of object for colvars lib 2022-12-27 14:04:54 -05:00
c68f754923 remove access to non-existing option 2022-12-27 13:59:56 -05:00
faa2a9ffeb remove Lepton source from lib/colvars folder 2022-12-27 13:59:34 -05:00
7e984bfa2c update traditional make build support for shaking Lepton between LEPTON and COLVARS 2022-12-27 11:16:09 -05:00
989ec1b859 remove lmp/LMP_ prefix from Lepton namespace and files to share it with colvars 2022-12-27 10:57:43 -05:00
7b3866d04c move lepton utilities to lepton_utils namespace in LEPTON package 2022-12-24 00:08:03 -05:00
132a4cbc91 update traditional build for updated Lepton library and inclusion of asmjit 2022-12-23 12:13:10 -05:00
e59f99b440 add support for JIT compilation 2022-12-22 22:50:01 -05:00
ca27fb3a98 update Lepton to current master branch 2022-12-22 22:47:45 -05:00
2865929558 update for added source 2022-12-22 07:11:04 -05:00
4cbe8b353b move shared functionality to utility function added to Lepton library 2022-12-22 05:37:59 -05:00
4293771ae8 silence compiler warnings 2022-12-21 21:53:25 -05:00
e2f9d59484 whitespace fixes 2022-12-21 21:34:56 -05:00
c44e87d87a avoid name conflict with COLVARS package 2022-12-21 18:28:04 -05:00
517a2e5e26 import Lepton library with namespace and header changed to LMP_Lepton 2022-12-21 14:18:39 -05:00
e1d31a5633 Merge branch 'develop' into pod-updates 2022-11-30 13:47:40 -05:00
9b7b45bdea update lib/linalg README 2022-11-29 17:27:07 -05:00
e7d72040e1 update BLAS/LAPACK to version 3.11.0 from 22 Nov 2022 2022-11-27 18:06:01 -05:00