Commit Graph

42651 Commits

Author SHA1 Message Date
98f3a0a1ba refactor cone visualization to match what LAMMPS is showing 2025-02-12 15:28:13 -05:00
66ec1ff360 make resolution of VMD graphics primitives a compile time constant. 2025-02-12 12:09:29 -05:00
7af11fe604 make more use of SafeFilePtr class. 2025-02-12 10:35:02 -05:00
944e50b06a need to define another constructor to make the SafeFilePtr class work for more cases 2025-02-12 10:34:21 -05:00
5b7bf1951e simplify logic for drawing a cylinder region 2025-02-12 05:42:51 -05:00
1d3ad36e85 add support for visualization plane regions 2025-02-11 07:40:42 -05:00
252bd9aa9d must close "owned" file pointer if a different one is is assigned 2025-02-11 05:13:07 -05:00
08553a7272 apply safe file pointer 2025-02-10 22:48:55 -05:00
c42650257f move AutoClose class to separate header and rename to SafeFilePtr 2025-02-10 22:27:09 -05:00
f8b13b21ec Merge branch 'develop' into collected-small-changes 2025-02-10 17:57:49 -05:00
c41c4086ca Merge pull request #4468 from akohlmey/add-region2vmd-command
Add a new region2vmd command for visualizing regions with VMD
2025-02-10 16:57:44 -05:00
d9d24300a4 add support for ellipsoid regions 2025-02-10 00:05:42 -05:00
4cab0bfe1a implement all open face cases for cylinder regions 2025-02-09 22:19:03 -05:00
0de9da709c add support for moving regions and open faced regions 2025-02-09 18:25:14 -05:00
6bd2e0e496 update error messages to use new Error class APIs 2025-02-09 10:53:03 -05:00
31697bac8d correct copy-n-modify omission 2025-02-09 10:22:55 -05:00
e00e215f99 add support to prism regions to be exported to VMD 2025-02-09 10:16:30 -05:00
5557e03e54 add hint about setting top molecule in VMD 2025-02-08 23:26:43 -05:00
3cd028fd01 refactor command to be more flexible and capable 2025-02-08 22:52:19 -05:00
f693577262 add versionadded tag 2025-02-08 18:30:00 -05:00
0a8e2f923d add to .gitignore 2025-02-08 18:29:27 -05:00
8a87a6068c use lighter color "silver" 2025-02-08 18:23:57 -05:00
c7db4e9e19 add docs for region2vmd command 2025-02-08 18:06:32 -05:00
95858bccc6 add region2vmd command 2025-02-08 18:06:12 -05:00
8791b29aa2 give Region2VMD class access to protected members of region style classes 2025-02-08 18:05:57 -05:00
098bb4b3c8 flag development version 2025-02-08 09:08:43 -05:00
792144f12e Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2025-02-07 21:54:58 -05:00
8a1744c038 Updates to the instructions for building the manual. 2025-02-07 21:51:37 -05:00
6eddb3a33f various minor tweaks and reformatting for CMake scripts 2025-02-07 20:50:14 -05:00
61a2db4715 revise and expand global README file 2025-02-07 19:47:05 -05:00
1a636acf81 simplify / optimize 2025-02-07 07:34:32 -05:00
ab6668031f explain some more about transition to C++17 2025-02-06 20:55:40 -05:00
d22533350a update copyright year 2025-02-06 20:55:23 -05:00
c9f41f9d90 explain more steps of the release process related to building packages 2025-02-06 20:55:11 -05:00
a547b9a417 do not mention rebasing 2025-02-06 15:00:54 -05:00
04cad88b55 we can include ML-RANN package now in VLA check 2025-02-06 00:10:17 -05:00
97e7baf33f get rid of non-standard variable-length arrays in ML-RANN package 2025-02-05 23:41:36 -05:00
2ae07ec1cb sync C++ standard selection with main CMakeLists.txt file 2025-02-04 17:00:12 -05:00
c10219da9e Merge pull request #4451 from akohlmey/next_release
Step version strings for next feature release
patch_4Feb2025
2025-02-04 13:31:31 -05:00
2777984355 Merge pull request #4461 from akohlmey/last-minute-fixes
Last minute fixes for next feature release
2025-02-04 09:51:39 -05:00
3fb8857be5 relax epsilon for tests on ARM64 2025-02-03 22:19:12 -05:00
113b2e47f0 must set val.iarg before processing any arguments 2025-02-03 22:18:45 -05:00
a01ac8c907 use byref() instead of pointer() to pass pointers to ctypes objects to C 2025-02-03 22:18:17 -05:00
995d6ab41f Merge branch 'develop' into next_release 2025-02-03 17:55:37 -05:00
87dae19019 Merge pull request #4459 from akohlmey/collected-small-fixes
Collected small fixes and changes
2025-02-03 17:43:41 -05:00
848a4300fe Merge branch 'develop' into collected-small-fixes 2025-02-03 14:54:38 -05:00
3b62892fc3 Merge pull request #4450 from rbberger/rberger/python_numpy_wrapper_fixes
python: numpy wrapper handle error cases
2025-02-03 14:53:52 -05:00
06506aa23b Merge pull request #4415 from evoyiatzis/patch-2
Allow definition of prism region using equal style variables
2025-02-03 14:50:00 -05:00
8a0027e788 improve phrase 2025-02-03 11:40:56 -05:00
b17699a56a Merge pull request #4460 from ndtrung81/fixed-failed-regression-tests
Fixed the failed regression test with Lost atoms in an EFF example input, and added reference log files
2025-02-03 11:38:53 -05:00