Commit Graph

18725 Commits

Author SHA1 Message Date
9ea5e40255 move developer's guide tex sources back to src/Developer 2019-11-14 12:35:50 -05:00
32753a59e6 one more whitespace cleanup 2019-11-14 09:42:44 -05:00
fd22ef52cc Merge branch 'master' into collected-small-fixes 2019-11-14 09:41:50 -05:00
5d042cf629 Merge pull request #1740 from cabb99/master
Fix print patch to allow print on rerun
2019-11-14 09:25:50 -05:00
60fe0c0b86 Silence compiler warning 2019-11-14 09:24:56 -05:00
e0646b73e3 revised implementation of inclusion of embedding energy in PairEAM::single()
this variant is also ported to USER-OMP and OPT
2019-11-13 01:46:00 -05:00
f1e4f98364 include embedding energy term in PairEAM::single() 2019-11-13 01:04:39 -05:00
f704079fb7 remove trailing whitespace 2019-11-12 16:13:01 -05:00
25e2a7a37f update bond style table docs about out-of-range errors 2019-11-12 14:25:45 -05:00
1955c57791 make fix print work the same for run, multiple runs, rerun 2019-11-12 10:16:50 -07:00
de7a8c6559 Merge pull request #1768 from ellio167/doc-conda
Add Install_conda doc
2019-11-11 17:11:22 -05:00
5289417e9c Merge pull request #1739 from evoyiatzis/shape_chunk
Computing the eigenvalues of the gyration tensor and shape parameters…
2019-11-11 17:10:52 -05:00
06fdaa04b3 Merge pull request #2 from rbberger/shape_chunk
Fix documentation
2019-11-11 21:46:44 +01:00
0018a88f45 Only keep RST version of compute_gyration_shape_chunk 2019-11-11 15:32:48 -05:00
22a033f5d4 Move compute_gyration_shape_chunk.txt into txt/ folder 2019-11-11 15:32:09 -05:00
16f67ee56a Add new words to false-positives.txt 2019-11-11 15:26:48 -05:00
9e2129b676 Merge pull request #1767 from LucienPan0903/p_class2
Patch of class2 dihedral
2019-11-11 10:44:37 -05:00
02791e0b4d Add Install_conda doc 2019-11-10 17:49:15 -06:00
93b03aa82c Merge pull request #1 from akohlmey/shape_chunk
Documentation update
2019-11-10 21:35:30 +01:00
599a189545 Patch of class2 dihedral 2019-11-08 17:28:49 -05:00
59b5ef8fb0 Patch of Dihedral class2 2019-11-08 17:17:01 -05:00
cb30ab7556 Merge branch 'p_class2' of github.com:LucienPan0903/lammps into p_class2 2019-11-08 16:28:49 -05:00
4baa665a80 Patch of class2 dihedral
Fix the NAN problem when any two bonds are nearly parallel
2019-11-08 16:26:54 -05:00
e5933ecc4a Fix previous submission of nan problem 2019-11-08 16:22:57 -05:00
29b2dc7043 Patch of class2 dihedral
Fix the nan problem when any two bonds are nearly parallel
2019-11-08 16:11:34 -05:00
b9648884bb Add rst versions of new documentation 2019-11-08 15:28:12 -05:00
07a34382ae Magic
Merge branch 'master' into shape_chunk
2019-11-08 15:25:47 -05:00
90729ebe25 Merge pull request #1764 from jwood13/stable
Add a max and min option to fix_gcmc
2019-11-08 15:01:51 -05:00
6623169d97 Delete example file on request of @athomps 2019-11-08 15:00:26 -05:00
95a6498569 Merge pull request #1766 from lammps/compute-hma-doc
Link compute hma docs
2019-11-08 14:51:32 -05:00
8778ec9dde Merge pull request #1763 from lammps/fix-pour-doc
add documention to FixPour::outside(), simplify logic a bit
2019-11-08 12:09:19 -05:00
0583fb6ae0 update rst file also 2019-11-08 09:46:49 -07:00
82ecce8a1a Merge branch 'master' into compute-hma-doc 2019-11-08 09:40:40 -07:00
cbca94e4bf Merge pull request #1765 from rbberger/doc_fixes
Doc Fixes
2019-11-08 11:27:33 -05:00
02a1ef0630 add compute hma to list of computes 2019-11-08 09:25:08 -07:00
81e92de838 Fix doc Makefile 2019-11-07 21:47:29 -05:00
83f0eb0058 Remove unnecessary files 2019-11-07 21:47:02 -05:00
ce6893e717 Add max/min changes to documentation
again
2019-11-08 12:59:39 +11:00
e926c16544 Merge remote-tracking branch 'upstream/master' into stable 2019-11-08 12:58:23 +11:00
c5b0f0afcf add documention to FixPour::outside(), simplify logic a bit 2019-11-07 17:06:38 -07:00
d37ee59296 Add example of fix gcmc max behaviour 2019-11-08 10:53:53 +11:00
a2eec80f25 add max and min to documentation 2019-11-08 10:53:53 +11:00
e5dd154366 Make max/min prevent moves already outside the bounds
Previously allowed free movement outside the bounds until they were reached.
Now forces movement towards the bounds
2019-11-08 10:53:53 +11:00
6d7a591dce Merge pull request #1762 from rbberger/doc_lammps_lexer
Add LAMMPSLexer for LAMMPS code-blocks in docs
2019-11-07 16:25:01 -05:00
d2da55f5e3 Update Howto_pylammps.rst and remove Howto_pylammps.txt 2019-11-06 23:52:04 -05:00
3f10c4fcdc Update Manual_build.rst and remove Manual_build.txt 2019-11-06 23:33:14 -05:00
eaef8089a1 Add LAMMPSLexer for LAMMPS code-blocks in docs 2019-11-06 17:40:39 -05:00
bb18adc745 Merge pull request #1761 from rbberger/doc_updates
Update documentation tools and paths
2019-11-06 12:24:03 -05:00
9ac9ba6401 Merge branch 'master' into doc_updates 2019-11-06 11:35:35 -05:00
cf0eac62fa Merge pull request #1745 from yafshar/feature_parameterupdate
New KIM package feature: kim_param command for querying model parameters.
2019-11-06 09:17:07 -05:00