Commit Graph

19027 Commits

Author SHA1 Message Date
a3fd7345a7 Merge branch 'master' into next_patch_version 2020-01-08 17:20:36 -05:00
18a0cd3ead Merge pull request #1817 from akohlmey/collected-small-fixes
Collected small bugfixes and updates
2020-01-08 17:16:34 -05:00
d3eed9dba4 Merge pull request #1752 from ndtrung81/gpu-mem-leak-init
Fixed bugs with kernel (re)compiling when the global device got clear and reinitialized
2020-01-08 16:17:13 -05:00
2d71d9d47b add citation for GPU accelerated TIP4P style 2020-01-08 16:15:18 -05:00
6e2c3b7ce9 Merge branch 'master' into collected-small-fixes 2020-01-08 16:14:19 -05:00
481c647889 Merge pull request #1776 from Vsevak/tip4p_gpu
GPU support for lj/cut/tip4p/long pair style
2020-01-08 15:35:39 -05:00
9e3364ed39 no need to flag ibody as private 2020-01-08 15:13:34 -05:00
7051c941e5 Merge branch 'master' into collected-small-fixes 2020-01-08 15:05:03 -05:00
c5768acbbc Merge pull request #1801 from lammps/rigid-gravity
enable fix rigid commands to add gravity to COM of rigid bodies
2020-01-08 14:47:03 -05:00
e243ca92b0 step version string for next patch release 2020-01-08 14:31:08 -05:00
00dce6b198 Merge branch 'master' into gpu-mem-leak-init 2020-01-08 14:26:03 -05:00
97a798c776 Merge pull request #1824 from tabedzki2/patch-1
Updated Makefile.stampede: replacement options icc
2020-01-08 10:59:31 -05:00
1cd6d302bb Merge pull request #1823 from dsbolin/rigid-gravity
Adds an example using new options in fix rigid and fix gravity
2020-01-08 09:15:55 -05:00
f1a23b1ea2 Updated Makefile.stampede: replacement options icc
The default options for Makefile.stampede did not compile. They had to be updated to include the `q` replacement options.
2020-01-07 21:47:43 -05:00
e8a941a0b9 Remove unnecessary data transfer from tip4p/gpu pairstyle init
Such data transfer is performed at each timestep, so it does not belong to the initialization
2020-01-08 01:48:47 +03:00
8cc8c2793b Merge pull request #1819 from jotelha/master
Find parallel NetCDF with cmake for USER-NETCDF
2020-01-07 16:39:35 -05:00
23b73a0ebc plug small memory leak 2020-01-07 15:32:44 -05:00
f8ad7cc90f refactor fix for detecting intel pair styles in hybrid pair styles 2020-01-07 15:09:50 -05:00
4c974c6d5e avoid uninitialized memory access when used with hybrid styles 2020-01-07 11:14:22 -05:00
7470a120bb fix small memory leak in USER-INTEL binning style 2020-01-07 11:13:43 -05:00
46584d4520 Update cmake/Modules/FindPNetCDF.cmake
Co-Authored-By: Christoph Junghans <christoph.junghans@gmail.com>
2020-01-07 13:26:01 +01:00
24ef36dd4d Update cmake/Modules/FindPNetCDF.cmake
Co-Authored-By: Christoph Junghans <christoph.junghans@gmail.com>
2020-01-07 13:25:54 +01:00
7bc8c8e9d8 Minor tweaks to in.rigid.gravity example 2020-01-06 21:26:34 -07:00
6aa4f4caf6 Added example script and input data file showing benefits of new fix gravity and fix rigid options 2020-01-06 21:18:00 -07:00
66a473455e silence warnings from generic OpenCL header files (as seen on Fedora 31) 2020-01-06 17:34:26 -05:00
8ac2da792c fix typo in fix ave/atom docs 2020-01-06 16:18:23 -05:00
0dda120ef8 Merge pull request #1800 from jibril-b-coulibaly/patch-1
Correct typo in pair_granular.rst
2020-01-06 15:35:36 -05:00
5500198b4e correct whitespace issue in dynamical_matrix.cpp 2020-01-06 15:21:18 -05:00
394e5459b6 correct whitespace issues in pair_meamc.cpp 2020-01-06 15:16:08 -05:00
fbc0b8a881 Merge branch 'master' into collected-small-fixes 2020-01-06 15:14:48 -05:00
00dfde2952 Merge pull request #1783 from ares201005/fix_dynmat
add force modifications in dynamical_matrix.cpp
2020-01-06 15:08:35 -05:00
1be8109618 Merge pull request #1798 from martok/meamc-dec19
Collected MEAM/C additions
2020-01-06 15:07:08 -05:00
a63792a07a need to explicitly run pair_init_check() inside kspace_init_check() for hybrid styles 2020-01-03 01:40:20 -05:00
2f6018b099 use regex pattern matching to make style lookup more specific with less code 2020-01-03 01:39:35 -05:00
e11374d433 print intel package status message only once per run 2020-01-03 01:37:12 -05:00
337b0fd649 Fix 'sametag' transfer 2019-12-22 20:20:12 +03:00
3f24144abd Update cmake/Modules/FindPNetCDF.cmake
Co-Authored-By: Christoph Junghans <christoph.junghans@gmail.com>
2019-12-22 13:25:24 +01:00
0c7d6a01e8 Update cmake/Modules/FindNetCDF.cmake
Co-Authored-By: Christoph Junghans <christoph.junghans@gmail.com>
2019-12-22 13:25:08 +01:00
4e7bcee8e3 Update cmake/Modules/FindNetCDF.cmake
Co-Authored-By: Christoph Junghans <christoph.junghans@gmail.com>
2019-12-22 13:24:34 +01:00
a72f53e367 add stan/steve as code owners for minimizer changes 2019-12-21 16:18:26 -05:00
a88a00dbbb remove trailing whitespace 2019-12-20 15:08:51 -05:00
3b76ab56f0 port gravity changes to rigid fixes to USER-OMP package versions 2019-12-20 12:09:50 -05:00
c8a53d560a Find parallel NetCDF with cmake for USER-NETCDF
Conflicts:
	cmake/presets/forhlr2-gnu.cmake
2019-12-20 17:59:05 +01:00
21f454c040 correct truncated AlCu.bop.table potential file from Xiaoweng Zhou 2019-12-20 03:48:08 -05:00
a11b886b5c add warning if gravity is used incorrectly with overlapped rigid bodies 2019-12-19 16:17:14 -07:00
402f5585ff Merge pull request #1795 from jrgissing/bond/react-chiral_centers
Bond/react chiral centers
2019-12-19 16:13:32 -05:00
5a2074cc5a Merge pull request #1816 from stanmoore1/kk_min_fix
Fix issue in Kokkos minimize
2019-12-19 16:12:53 -05:00
8283e68cdd Merge pull request #1807 from ndtrung81/gpu-readme-update
Updates to README and Makefile's in the GPU package
2019-12-19 14:59:12 -05:00
27180e0b22 Merge pull request #1812 from ohenrich/user-cgdna
USER-CGDNA: Added oxRNA2 files to .gitignore
2019-12-19 14:58:56 -05:00
6192741f79 Merge pull request #1813 from wmbrownIntel/user-intel-tri-fix
Bug fix for USER-INTEL package with triclinic neighbor builds.
2019-12-19 14:58:40 -05:00