Commit Graph

23308 Commits

Author SHA1 Message Date
a8a9fb6eb8 adapt unit test for Jacobi class 2020-09-16 18:17:23 -04:00
96f4178d92 add URLs to upstream projects for eigensolvers 2020-09-16 17:53:27 -04:00
942ed3afeb update copyright headers to match LAMMPS' conventions 2020-09-16 17:35:58 -04:00
bd542efa52 include math_eigen.h, remove it from .gitignore 2020-09-16 14:12:14 -04:00
0931cdd109 relax epsilon for rigid body integrators 2020-09-16 14:07:28 -04:00
fd9e39bf1a update docs 2020-09-16 14:07:06 -04:00
10991ee638 separate the MathEigen implementation into its own header file 2020-09-16 14:06:58 -04:00
f7a939dec2 update atom_style tester for new jacobi implementation 2020-09-16 10:25:03 -04:00
981d60f1bd update rigid tests for new eigensolver 2020-09-15 22:47:52 -04:00
48ad860889 only do Zstd tests if it is enabled/found. 2020-09-15 22:47:10 -04:00
f5998692d0 Merge branch 'master' into math_eigen 2020-09-15 21:37:05 -04:00
d611b85d7d Merge pull request #2360 from akohlmey/symbolic-atom-constants
Replace numeric with symbolic constants in Atom and AtomVec classes
2020-09-15 21:27:47 -04:00
cf7d2109a3 Merge branch 'library-progguide' into symbolic-atom-constants 2020-09-15 19:50:18 -04:00
4b25eb1a34 small tweaks 2020-09-15 19:08:40 -04:00
88cee4ff09 the library interface is for calling from C, so switch nullptr in comments/docs back to NULL 2020-09-15 19:07:07 -04:00
a3765eb75b Merge branch 'master' into library-progguide 2020-09-15 18:58:29 -04:00
0f6a34775c Merge branch 'master' into symbolic-atom-constants 2020-09-15 17:44:31 -04:00
cebf6d33ba Merge pull request #2358 from eagunn/iss2345
Replace instances of NULL with nullptr
2020-09-15 17:41:24 -04:00
f481a403bc Merge pull request #2366 from akohlmey/msm-fix
Apply alternate bugfix to KSpace style MSM that avoids grid level overflow
2020-09-15 16:22:19 -04:00
618b08dcfc Merge branch 'master' into symbolic-atom-constants 2020-09-15 14:58:13 -04:00
3dd3c6a2a5 redo fix for class member shadowing while avoiding overflowing levels 2020-09-15 14:48:55 -04:00
16749566f8 Revert "fix issue with local variable shadowing a global variable"
This reverts commit 3368eb79d8.
2020-09-15 14:42:00 -04:00
2165f6ed38 Merge pull request #2363 from akohlmey/consistent-memory-usage
Make memory usage reporting consistent
2020-09-15 14:21:07 -04:00
baa49984c2 update comments 2020-09-15 14:19:40 -04:00
326d9f398c Merge branch 'master' into iss2345 2020-09-15 14:06:16 -04:00
5cbb54b844 Merge branch 'iss2345' of github.com:eagunn/lammps into iss2345 2020-09-15 14:04:16 -04:00
b5832191d8 Merge pull request #2364 from akohlmey/force-test-bugfix
Force style unit test template bugfix
2020-09-15 13:40:13 -04:00
5da50d64c9 reformulate 2020-09-15 12:32:43 -04:00
2f3c916a57 add unit test for lammps_memory_usage() 2020-09-15 12:29:03 -04:00
3576464268 Merge branch 'master' into consistent-memory-usage 2020-09-15 12:25:16 -04:00
165444004e Merge pull request #2362 from akohlmey/library-progguide
Updates to C-Library interface progammer guide and reference
2020-09-15 11:51:02 -04:00
c6bc21febf Merge pull request #2361 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-09-15 11:28:25 -04:00
2f3c73217b detect if dt has been changed from default and print warning if reset by units command 2020-09-15 10:50:44 -04:00
e30864431f add test for missing quartic bond style 2020-09-15 10:12:18 -04:00
2794108837 don't update per-atom pair data if not available 2020-09-15 10:12:07 -04:00
238730b13d update epsilon 2020-09-15 09:55:58 -04:00
c6b6369d2d fix bug in input script templates that would have the timestep setting overwritten by a units command 2020-09-15 09:46:57 -04:00
bc31486fd1 start tests for lammps_extract_global() 2020-09-15 09:27:07 -04:00
bb76215ef0 add library interface to retrieve memory usage info 2020-09-15 01:59:58 -04:00
4b64be77e0 consolidate memory allocation information into a single function (in Info) 2020-09-15 01:59:58 -04:00
0183e999c9 consistently return "memory_usage" as double. 2020-09-15 01:59:58 -04:00
39681acfa4 add cross reference 2020-09-14 21:03:39 -04:00
d27d4912af test lammps_extract_settings() 2020-09-14 20:53:19 -04:00
1e54a9fcf1 complete tests for extracting and resetting the box 2020-09-14 20:27:29 -04:00
5c7f67201b make naming more consistent 2020-09-14 20:27:10 -04:00
93bd851ab0 fix typo 2020-09-14 17:39:31 -04:00
df9f0e244b add false positive 2020-09-14 17:18:14 -04:00
5634dd4394 correct formatting of examples 2020-09-14 17:15:53 -04:00
b1e0990c46 update lammps config settings calls example 2020-09-14 17:11:27 -04:00
f70717710e fix for zstd support. add styles to list at top and document .zst extension requirement 2020-09-14 17:07:09 -04:00