Commit Graph

11631 Commits

Author SHA1 Message Date
a5b66f02d1 update docs 2025-01-18 22:19:43 -05:00
7ffe04ca92 discuss that only turning off bonds can lead to "bond atom missing" errors
also make notes and this warning stand out more by using adminition boxes
2025-01-18 09:08:08 -05:00
e38c13a764 add strcompress function and use it for error output 2025-01-17 22:59:44 -05:00
9b443c9a4d add utility function to compare two string while ignoring whitespace 2025-01-17 14:06:30 -05:00
5a45ef6994 explain error message output for users 2025-01-17 10:35:34 -05:00
a4cc00041c add notes about errors and warnings and log output 2025-01-17 05:13:25 -05:00
4afdf493d7 integrate and adapt contents from PR #4028 by @alphataubio 2025-01-15 06:05:25 -05:00
89370efe39 Merge branch 'develop' into develop 2025-01-14 19:12:14 -05:00
0fe7fbdb42 Merge branch 'develop' into pair_d3 2025-01-14 16:05:29 -05:00
c2868c448e Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-13 20:34:14 -05:00
754517dcf6 Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2025-01-13 20:32:01 -05:00
6d7926a026 add missing lammps_expand() function 2025-01-13 19:13:34 -05:00
55a3b28f7d replace CR-LF with LF 2025-01-13 16:19:40 -05:00
742c869534 Merge branch 'develop' into gsalkuin/develop 2025-01-13 16:08:18 -05:00
be048fc636 cosmetic changes 2025-01-13 16:01:18 -05:00
ddff545a4c Merge pull request #4431 from Becksteinlab/imd-v3-integration
Interactive Molecular Dynamics [IMD] Version 3 implementation
2025-01-13 15:59:41 -05:00
62aa803d53 order list of removed commands and packages in reverse order of their removal date
also add an (automatic) table of contents simplify finding something
2025-01-13 12:03:31 -05:00
686326a999 Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-13 01:05:48 -05:00
dd6fea3fcd Merge branch 'develop' into cmake-cpp-std-deprecation 2025-01-12 23:54:50 -05:00
f50edb5a38 Merge pull request #4369 from rbberger/deprecate_pylammps
Python interface updates
2025-01-12 23:30:22 -05:00
2df402c4ff Merge branch 'develop' into cmake-cpp-std-deprecation 2025-01-12 21:47:02 -05:00
a5c3305c42 sync with lammps tutorials paper description 2025-01-12 15:09:42 -05:00
dce1231052 add a lammps_eval() function to the C library interface and all derived wrappers 2025-01-12 00:39:18 -05:00
8b2c852121 correct and update the Python Howto 2025-01-11 17:54:44 -05:00
dbc6f77e53 Merge branch 'develop' into deprecate_pylammps 2025-01-10 16:01:06 -07:00
5a0222153a small doc updates and corrections 2025-01-10 12:15:24 -05:00
e858c8a78d Merge branch 'develop' into angle-mwlc 2025-01-10 14:33:50 +08:00
6bdc58baaf improved the documentation 2025-01-10 14:05:19 +08:00
c7ae973948 more edits to angle_mwlc documentation 2025-01-10 12:02:27 +08:00
a769b3d6b2 Merge branch 'develop' into collected-small-changes 2025-01-09 11:17:05 -05:00
9c1da4cbc9 whitespace fix in doc 2025-01-08 22:45:38 -08:00
090e55b1d8 Merge branch 'develop' into develop 2025-01-08 22:42:31 -08:00
9a513ca82c Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-08 21:54:04 -05:00
494f58904c correct reference 2025-01-08 20:54:04 -05:00
6a363d441b small formatting tweaks, add versionadded tag 2025-01-08 20:52:45 -05:00
02a8a9d706 make LAMMPS_ASYNC_IMD a CMake variable, too, and document it properly 2025-01-08 20:50:16 -05:00
1ebf591592 Merge branch 'develop' into imd-v3-integration 2025-01-08 16:13:50 -07:00
24763bfd8e add info on how to debug if LAMMPS seems stuck 2025-01-08 12:24:13 -05:00
cbab95e569 update for more clarity 2025-01-08 10:04:06 -05:00
8595d8f05c Merge branch 'develop' of github.com:lammps/lammps into kk_update_4.5.0 2025-01-07 10:04:43 -07:00
cec242a421 remove trailing whitespace 2025-01-06 12:30:45 -07:00
670447ea21 correct list of valid reference syntax to computes, fixes, and properties 2025-01-04 16:22:05 -05:00
735606a0b5 document inclusion of WHAM 2025-01-02 18:03:56 -05:00
908c2aaf5e Merge branch 'develop' into develop 2024-12-29 20:35:47 -08:00
9dbb9d356d reformulate to avoid command-line 2024-12-29 12:05:07 -05:00
0bdaece1f0 add keyboard shortcut and context menu entry for jump to next warning 2024-12-29 11:35:44 -05:00
73eeda3b1d display panel with number or warnings and lines in output window, button for jumping to next warning 2024-12-28 18:44:44 -05:00
211099b7ca small updates and corrections to the LAMMPS-GUI howto 2024-12-27 22:57:51 -05:00
fb33541961 use command-line consistently where applicable and drop "line" where not 2024-12-27 04:03:41 -05:00
de0baba124 add updates/corrections, improve formatting 2024-12-27 03:50:51 -05:00