Commit Graph

9340 Commits

Author SHA1 Message Date
b51c50294e implemented create_atoms and encode_image_flags and unit tests for them; added IMGMASK and friends to extract_setting and unit tests for them; wrote documentation for them 2022-10-19 18:40:12 -05:00
637810515a make compute rigid/local consistent with other "possible attributes" docs 2022-10-17 14:51:10 -05:00
677997699d more consistency 2022-10-15 15:35:29 -04:00
9e43e9792c Fixed a couple more mathbf->boldsymbol errors in fix brownian doc 2022-10-15 10:47:33 -05:00
09a14d558d explicitly select Times New Roman for \textrm, Helvetica for \textsf and Times New Roman for math as well 2022-10-14 21:27:55 -04:00
2b18f6a3d3 replace tab 2022-10-14 21:27:00 -04:00
b586b72ddd removed an extra space 2022-10-14 18:27:21 -05:00
77958b5ef1 Missed one I->i edit 2022-10-14 18:04:49 -05:00
e346151271 Updated docs for fixes bond/break, bond/create, and bond/react for math/etc. 2022-10-14 17:40:22 -05:00
3d0a7d774a Updated docs for fix bocs to match source code and include math 2022-10-14 16:04:07 -05:00
7550fdc862 Sphinx conf edit so PDF ToC entries w/ subsections >= 100 work 2022-10-14 15:28:55 -05:00
e3c78b70ed Fixed remaining discrepancies between lists of keywords and doc of them 2022-10-13 23:00:13 -05:00
edcdedc574 made keyword lists and descriptions consistent for all fix styles 2022-10-13 19:20:08 -05:00
70fd789b4c missing format keyword in fix ave/time doc 2022-10-13 14:51:30 -05:00
3703af9887 Missing keyword in fix_ave_histo doc 2022-10-13 14:48:26 -05:00
3607fd766b Missing key word in fix/ave/chunk docs, edits to bond_coeff docs 2022-10-13 14:42:10 -05:00
8027e02cbb Merge branch 'lammps:develop' into doc-fixes 2022-10-13 09:00:07 -05:00
d499c2f61b Merge pull request #3474 from stanmoore1/kk_update_3.7
Update Kokkos library in LAMMPS to v3.7.0
2022-10-11 16:30:19 -04:00
3e1acfc500 Update Kokkos Arch in docs 2022-10-10 16:29:55 -06:00
1bc16d8a78 fix spelling and table format issues. re-wrap paragraphs in doc sources. 2022-10-10 17:26:13 -04:00
ali
a38054cf32 change area_per_patch to area/patch 2022-10-10 16:03:09 -05:00
aea3421311 whitespace fixes 2022-10-10 15:26:40 -04:00
ali
ba45678528 DIELECTRIC package doc and example updates 2022-10-10 11:04:04 -05:00
ali
be208f037d quick doc updates 2022-10-10 11:04:04 -05:00
ali
b3fa2b7c4f update of DIELECTRIC package documentation and examples 2022-10-10 11:03:52 -05:00
eca8b77c84 Merge branch 'lammps:develop' into doc-fixes 2022-10-05 22:47:48 -05:00
967c84cb69 Merge pull request #3470 from hammondkd/fortran-further-tinkering
Further extending the Fortran interface
2022-10-05 21:20:06 -04:00
7157643fdd Merge pull request #3315 from yury-lysogorskiy/feature/pace-al
ML_PACE with extrapolation grade / active learning
2022-10-05 20:16:13 -04:00
9abc0b6c11 Merge branch 'lammps:develop' into doc-fixes 2022-10-05 14:13:08 -05:00
723255bf7e Merge remote-tracking branch 'github/develop' into fortran-further-tinkering 2022-10-05 10:52:36 -04:00
f279b5d042 Math fixes and other edits for fix_brownian.rst 2022-10-04 22:36:30 -05:00
3c11fa39b6 Doc edits for mdi.rst 2022-10-04 18:49:35 -05:00
8be7634b5f Merge branch 'collected-small-changes' into pair-zero-full 2022-10-04 14:36:02 -04:00
90e820e8ec format mpirun/mpiexec consistently 2022-10-04 08:55:53 -04:00
f2b3d8e8c3 use morse interaction energy from bond style morse not pair style morse 2022-10-04 07:02:44 -04:00
4a06559da5 update docs 2022-10-04 05:18:42 -04:00
5508c7f25e Bug fix for pair_style list quartic. 2022-10-04 13:27:32 +08:00
ed8e317ef6 Added quartic function for explicit pair interaction in pair_style list. 2022-10-04 10:40:32 +08:00
82bf23401f Fix whitespace 2022-10-03 12:45:18 -06:00
981f75d92f Example in docs 2022-10-03 12:40:05 -06:00
c82fdd4898 Add docs 2022-10-03 11:57:47 -06:00
94ff9cea4c Revert "update documentation: explain fix_modify pair every N"
This reverts commit 2f231bcd50.
2022-10-03 19:43:37 +02:00
6a2023e7df spelling 2022-10-03 09:55:20 -04:00
d711a51657 Merge remote-tracking branch 'github/develop' into fortran-further-tinkering 2022-10-03 09:37:52 -04:00
dc5324c1db Updated unit tests to use keepstuff; whitespace fixes 2022-10-02 21:26:42 -05:00
db9b59c269 Implemented scatter_atoms and scatter_atoms_subset + unit tests + documentation + typos/edits 2022-10-02 20:32:42 -05:00
c5c21bb36c Implemented, tested, and documented gather_atoms and variants; added RST docs for lammps_scatter_atoms and lammps_gather_atoms and variants (library.cpp); checked for missing atom map in lammps_gather_atoms_subset; fixed bug in keepstuff.f90; fixed docs for extract_variable 2022-10-02 15:28:10 -05:00
c777434b72 use kcal consistently 2022-10-01 21:05:16 -04:00
39ea6ef30e make \AA macro available in :math: for HTML and PDF
use the (newly redefined) \AA macro for Angstrom symbol throughout
instead of either \mathring{A} or AA
2022-10-01 20:58:48 -04:00
69ca7105ef provide some more details about typesetting special characters and math 2022-10-01 20:41:48 -04:00