Commit Graph

1355 Commits

Author SHA1 Message Date
7b6a3c4307 remove redundant void arguments 2021-10-12 21:17:46 -04:00
9cf6b927cb Merge branch 'master' into collected-small-changes
# Conflicts:
#	src/REAXFF/fix_reaxff_species.cpp
2021-10-11 21:24:11 -04:00
124f7760d8 Merge branch 'master' into feature/ml-pace-multispecies 2021-10-11 07:30:22 -04:00
ba44d6aba2 must set define to "see" the lammps_open() library function 2021-10-09 10:20:47 -04:00
dd6e3c1acc avoid variable length array and signed vs. unsigned warnings 2021-10-08 20:07:20 -04:00
203b779622 also update eigen download for traditional build 2021-10-02 23:17:08 -04:00
32049c3484 adopt for new multispecies PACE implementation 2021-09-29 16:04:09 +02:00
7601001632 Fix Colvars output files not written with "run 0"
See:
  https://github.com/Colvars/colvars/commit/ff2f0d39ee5
which fixes a bug introduced in:
  https://github.com/Colvars/colvars/commit/1e964a542b

The message applies to NAMD, but the logic used in LAMMPS when handling "run 0" is very similar.

The Colvars version string is also updated, however this commit does not
include other changes, such as the following:
  https://github.com/Colvars/colvars/pull/419
which were not fully completed before the LAMMPS Summer 2021 finalization.
2021-09-27 13:38:30 -04:00
9da8c932ab make check more obvious 2021-09-25 21:33:10 -04:00
530912a930 detect double precision support according to OpenCL specs (1.2 and later) 2021-09-25 07:20:52 -04:00
42dca75225 add check and suitable error message when fp64 is required but not available 2021-09-24 12:17:58 -04:00
17ba0d5804 possible workaround for some GPU package neighbor list issue 2021-09-22 21:47:32 -04:00
9906486578 correct paths to downloaded PACE package sources in lib 2021-09-22 12:40:19 -04:00
afccf1933f correctly specify the destructor function name. 2021-09-20 23:40:14 -04:00
cd3efc3fa8 initialize all members 2021-09-17 22:45:26 -04:00
e6fb0e3bd8 small tweaks 2021-09-17 16:51:37 -04:00
5411075cc6 modernize 2021-09-16 07:44:27 -04:00
00e396c921 move misplaced #endif and make code more readable 2021-09-16 07:33:24 -04:00
353b3a2bb3 reformat for increased readability 2021-09-16 07:25:04 -04:00
272badfa7f small tweaks 2021-09-15 20:14:06 -04:00
7196a295a6 small tweaks from static code analysis 2021-09-15 19:50:52 -04:00
70b09a809d Bugfix from Trung for crashes in pppm/gpu without local atoms 2021-09-15 17:23:12 -04:00
08eb3345af silence some compiler warnings 2021-08-31 15:11:46 -04:00
25a6c59cea Merge pull request #2900 from stanmoore1/kk_bugfixes
Fix issues in KOKKOS package
2021-08-30 15:28:41 -04:00
2de482f825 Merge pull request #2911 from akohlmey/fix-gpu-package-issues
Fix minor GPU package issues for the stable release
2021-08-30 13:45:23 -04:00
5d03028028 Merge branch 'master' into kk_bugfixes 2021-08-29 22:07:40 -04:00
39d8b239ff don't report bogus timings 2021-08-29 17:56:47 -04:00
89556f0bcb Override any OpenCL fast math JIT settings for born/coul/wolf{/cs}/gpu to resolve numerical deviations seen with some OpenCL implementations. 2021-08-28 17:01:58 -07:00
bbb3f35aa3 "int64_t" is defined in stdint.h; must use "long" in OpenCL kernels instead 2021-08-26 22:46:08 -04:00
0e8facdcbb Makefile.kokkos: fix (standard_in) 1: syntax error (kokkos PR4173) 2021-08-26 08:58:58 -06:00
49a81d6fba silence compiler warnings 2021-08-26 06:30:16 -04:00
c7357d5731 Merge remote-tracking branch 'github/master' into collected-small-changes 2021-08-26 05:30:50 -04:00
e3af1544f1 Merge pull request #2804 from Vsevak/tip4p_fix_types
Fix atom types handling in the tip4p/gpu kernels
2021-08-26 01:08:19 -04:00
9dd1dcab30 remove call to non-portable FDATE() function (a GNU Fortran extension) 2021-08-25 23:56:20 -04:00
61855c5058 apply whitespace checking/fixing also to free-format Fortran files 2021-08-25 23:46:48 -04:00
45e599cb33 modernize Fortran 2021-08-25 23:42:07 -04:00
3a3f32d3a8 Merge branch 'master' into tip4p_fix_types 2021-08-23 16:43:55 +03:00
92b5b159e5 replace tabs and remove trailing whitespace in lib folder with updated script 2021-08-22 20:45:24 -04:00
0123f9290f update Eigen3 to support the latest stable release 3.3.9 2021-08-06 18:59:56 -04:00
eb52f7c290 Update Colvars to version 2021-08-06 (silence Coverity Scan warnings)
Also include PDF copy of the manual forgotten in previous PR.
2021-08-06 10:32:37 -04:00
2a9be42758 Update Colvars to version 2021-08-03 2021-08-03 18:03:18 -04:00
f39c5178d8 update plumed to version 2.7.2 and drop workaround for 2.7.1 2021-07-27 09:56:52 -04:00
94ce07b2de Merge branch 'lammps:master' into tip4p_fix_types 2021-07-21 14:09:39 +03:00
88c8d1a3c6 rename "minimal" preset to "basic" 2021-06-30 20:39:17 -04:00
878795e64a bulk rename of remaining USER- packages 2021-06-29 20:12:59 -04:00
c085e55695 rename USER-SMD package to MACHDYN 2021-06-29 17:19:39 -04:00
c582d5b5ce update path to examples in README files 2021-06-29 15:58:08 -04:00
d52cd88492 rename USER-QUIP to ML-QUIP 2021-06-29 15:55:41 -04:00
fd24820603 rename USER-PACE to ML-PACE 2021-06-29 15:45:50 -04:00
031e537d3f rename USER-HDNNP to ML-HDNNP 2021-06-29 15:38:45 -04:00