Commit Graph

1355 Commits

Author SHA1 Message Date
9cdacbdebd apply cast to first variable in sequence of multiplications 2021-02-07 21:18:54 -05:00
06e484d3e0 make flags for supporting GPU archs consistent, add ampere consumer GPU arch 2021-02-07 15:30:55 -05:00
5573d01079 Use typecast to silence CodeQL warnings 2021-02-06 18:18:52 -05:00
754a469a01 add variable for handling cuda-mps-server 2021-02-05 16:43:51 -05:00
4166235be6 synchronize settings with CMake support 2021-02-05 16:43:18 -05:00
d8e2f90632 Update Kokkos library in LAMMPS to v3.3.1 2021-01-22 21:02:05 -07:00
14aac4d348 Merge branch 'master' of github.com:lammps/lammps into kk_update_3.3.0 2021-01-22 21:01:58 -07:00
7b87f45d1a Merge pull request #2554 from akohlmey/accelerator-introspection
Add accelerator introspection functionality
2021-01-18 11:59:00 -05:00
efda7559c0 Merge branch 'master' into accelerator-introspection 2021-01-16 00:15:07 -05:00
8407145e71 remove obsolete makefiles from lib/gpu based on info from @ndtrung81 2021-01-15 14:51:29 -05:00
2a508ee976 Merge pull request #2555 from ndtrung81/gpu-makefiles
Improvements to the GPU library Makefiles
2021-01-15 14:25:19 -05:00
537019f91f Made Nvidia.makefile and Opencl.makefile more compact, stored their older version 2021-01-13 22:52:01 -06:00
57db3631e5 Added Makefile.cuda for CUDA and Makefile.opencl for OpenCL, similar to what has been done in Makefile.hip for HIP 2021-01-13 22:50:32 -06:00
56909e88b1 implement accelerator introspection for GPU package 2021-01-11 17:03:23 -05:00
f2bdd4654e Update from master 2021-01-06 08:15:37 -07:00
427d037747 Merge pull request #2508 from athomps/mliappy3
Add support for Python based models to the MLIAP package
2020-12-29 09:59:43 -05:00
78a20a988e add support for plumed version 2.7.0 and make it default 2020-12-23 14:23:39 -05:00
eea14c55a9 Update Kokkos library in LAMMPS to v3.3.0 2020-12-22 08:52:37 -07:00
4c7f71bef3 Merge branch 'master' into mliappy3 2020-12-18 09:16:44 -05:00
588198c5dd Add --embed to python-config for legacy build
Newer versions of Python (v3.9) do not include the python library
in their python-config --ldflags unless you also pass --embed.
2020-12-15 16:10:52 -05:00
7f29c56c8f update for kim-api-2.2.1 2020-12-14 00:03:59 -06:00
77168b5105 delete hack 2020-12-07 18:32:11 -05:00
3f5a896aab update build system to make it auto-adapt to include python support or not into MLIAP 2020-12-07 17:35:10 -05:00
a67c4d8d05 Fix Kokkos verison 2020-11-30 12:23:33 -07:00
a6037a957f Update Kokkos library in LAMMPS to v3.2.1 2020-11-30 10:36:13 -07:00
968ca6f7ba Add missing updates to conventional build system 2020-11-22 02:40:17 -06:00
4be2a99977 Fix casing of the word GitHub 2020-11-10 14:20:52 +01:00
f23d831a90 update cslib homepage URLs to use https:// 2020-10-21 16:53:30 -04:00
28641bcbc7 Merge pull request #2402 from ndtrung81/gpu-dpd
Allowed dpd/tstat/gpu and dpd/gpu to work together in pair style hybrid
2020-10-14 17:18:02 -04:00
67803fe17f Minor cleanup for dpd/tstat in the GPU library 2020-09-28 11:41:39 -05:00
28812b1ea7 Merge pull request #2381 from akohlmey/collected-small-changes
Collected small changes
2020-09-24 16:17:28 -04:00
9df1bb4db0 remove obsolete makefiles. Makefile.xk7 is on death watch but Blue Waters still has such nodes 2020-09-22 17:47:14 -04:00
459d51bbea Do not disable atomics for HIP
atomics are disabled for NVIDIA 1.0 cards, which should not affect ROCm HIP
2020-09-22 22:34:24 +03:00
7b4304577a add -std=c++11 flag to compilation of all .cpp files on Linux 2020-09-22 10:58:54 -04:00
2d7b6a9008 remove dead code 2020-09-22 10:12:59 -04:00
7deb773440 Update Colvars to version 2020-09-17
Small changes

Implement global map of components (@HanatoK)
https://github.com/Colvars/colvars/pull/363

Format code examples with colored background (@giacomofiorin)
https://github.com/Colvars/colvars/pull/361

replaced jacobi() with an open-source version (@jewettaij)
https://github.com/Colvars/colvars/pull/360
2020-09-18 17:09:18 -04:00
2c17652ad6 Created another static instance for dpd/tstat in the GPU library 2020-09-18 10:28:52 -05:00
4e304177a1 Merge pull request #2356 from giacomofiorin/colvars-update
Update Colvars to version 2020-07-07
2020-09-16 23:37:02 -04:00
6315b277c8 Revert commit 14dfd3876a which walked-back
the NULL->nullptr changes for lib/awpmd.

Then, hand-applied a minor cleanup to comments, ala Axel's changes to the
rest of the codebase.
2020-09-14 12:05:46 -06:00
430d151660 Revert commit 05d41cd50d which walked-back
the NULL->nullptr changes for lib/poems.

Then, hand-applied a minor cleanup to comments, ala Axel's changes to the
rest of the codebase.
2020-09-14 12:05:46 -06:00
ec1fe4e445 update molfile plugin headers with latest versions from VMD 2020-09-14 12:05:45 -06:00
96b01f2383 T2345: Walking back nullptr changes to lib/awpmd 2020-09-14 12:05:45 -06:00
ed57554e18 T2345: Replace instances of NULL with nullptr
revert lib/poems to remove nullptr changes.
Walking back changes to lib as needed.
2020-09-14 12:05:44 -06:00
f524fa758d T2345: Replace instances of NULL with nullptr
Per guidance from Axel, revert lib/kokkos and lib/colvars
to remove nullptr changes.
2020-09-14 12:05:44 -06:00
9a5d8fd18b Manually resolve two rebase conflicts. 2020-09-14 12:04:51 -06:00
85c394453c Update Colvars to version 2020-07-07
This update contains several fixes and small new features or usability
improvements.  Descriptions and authorship information can be accessed from
the pull requests listed below.

Skip the zero-step also when multiple run commands are executed in sequence (@giacomofiorin)
https://github.com/Colvars/colvars/pull/357

Do not accumulate data at step 0 (@giacomofiorin)
https://github.com/Colvars/colvars/pull/345

Support for symmetry permutations of atoms in RMSD (@jhenin)
https://github.com/Colvars/colvars/pull/344

Detect new grid parameters (@jhenin)
https://github.com/Colvars/colvars/pull/341

Only access the output streams in non-threaded regions (@giacomofiorin)
https://github.com/Colvars/colvars/pull/338

Fix incomplete setting of default colvarsRestartFrequency (@giacomofiorin)
https://github.com/Colvars/colvars/pull/334

Fix typo (@e-kwsm)
https://github.com/Colvars/colvars/pull/333

Convert the input keyword to lowercase in read_state_data_key (@HanatoK)
https://github.com/Colvars/colvars/pull/332

Implement reflecting b.c. for ext Lagrangian (@jhenin)
https://github.com/Colvars/colvars/pull/329
2020-09-09 18:19:21 -04:00
9afba50d01 update for zstd support 2020-09-07 21:00:45 -04:00
ceed9284c1 Merge branch 'master' into collected-small-changes 2020-09-04 13:32:47 -04:00
90c13b1b14 update build files for plumed 2.6.1 release 2020-09-04 11:44:39 -04:00
203e42073a fix compilation error 2020-09-02 22:51:14 -04:00