Commit Graph

18544 Commits

Author SHA1 Message Date
ea512ce2bb update comments about which files to keep synchronized for consistency 2022-10-03 09:22:28 -04:00
dc5324c1db Updated unit tests to use keepstuff; whitespace fixes 2022-10-02 21:26:42 -05:00
db9b59c269 Implemented scatter_atoms and scatter_atoms_subset + unit tests + documentation + typos/edits 2022-10-02 20:32:42 -05:00
c5c21bb36c Implemented, tested, and documented gather_atoms and variants; added RST docs for lammps_scatter_atoms and lammps_gather_atoms and variants (library.cpp); checked for missing atom map in lammps_gather_atoms_subset; fixed bug in keepstuff.f90; fixed docs for extract_variable 2022-10-02 15:28:10 -05:00
d7ff6337ed refactor fix ave/time to use array of struct 2022-10-02 14:48:53 -04:00
39ff5c5722 remove unused enums 2022-10-02 14:48:17 -04:00
1eedec11df Merge branch 'test-compute-chunk' into collected-small-changes 2022-10-01 15:05:59 -04:00
eeff6aa06c make sure to always look up the region to avoid null pointer dereference 2022-10-01 13:35:02 -04:00
b9cc150f44 add unit test for chunks 2022-10-01 10:39:23 -04:00
27d9e313f5 convert compute chunk/spread/atom 2022-09-30 21:42:04 -04:00
a323e09822 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-30 19:40:32 -05:00
756d24ff9e Implemented vector-style variables in C, Python, and Fortran APIs; unit test and more for Fortran/extract_variable 2022-09-30 16:02:26 -05:00
cbe83701c1 better checking for valid data for format style variables 2022-09-30 15:06:25 -04:00
172106717d must match the entire string 2022-09-30 15:05:41 -04:00
a9701f54cb HIP tuning 2022-09-30 14:53:37 -04:00
ec0bc5aa5e improve detection of invalid format strings. allow to replace format style variables 2022-09-30 09:57:42 -04:00
038ad3a038 portability improvement 2022-09-30 09:02:14 -04:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
6962b43e70 Pack idxcg_block in with idxz 2022-09-29 09:56:20 -07:00
60f73b33bf Merge branch 'develop' into feature/snap-packed-idx 2022-09-29 09:50:33 -07:00
3ab8f6ea16 Finished docs for everything currently implemented 2022-09-29 09:14:49 -05:00
6c0da8cbaf Wrote documentation for extract_fix, extract_variable 2022-09-29 01:07:46 -05:00
1d4297e2dd Implemented extract_fix, extract_variable, flush_buffers; unit test for extract_fix 2022-09-28 22:09:26 -05:00
77fb3e8af8 improve error messages 2022-09-27 20:55:55 -04:00
90384371c0 this is redundant, since we set one_coeff and thus * * is required 2022-09-27 20:55:45 -04:00
5da63b1e1d Merge branch 'develop' into feature/pace-al 2022-09-27 14:01:58 -04:00
36d22b9d00 silence compiler warnings 2022-09-27 13:20:25 -04:00
502fd0eff8 ML-PACE.cmake: update tag and MD5 hashsum
pair_pace_extrapolation.cpp: add log message about type of active set (LINEAR or FULL)
2022-09-27 17:04:16 +02:00
0fe739eb35 Merge branch 'develop' into collected-small-changes
# Conflicts:
#	doc/utils/sphinx-config/false_positives.txt
2022-09-26 20:34:37 -04:00
be98b5a168 Merge pull request #3458 from Boogie3D/mliappy_unified
MLIAP Unified Interface
2022-09-26 20:33:17 -04:00
10068a0fde Merge pull request #3461 from julient31/llg-correction
Correction of some LL features in the SPIN package
2022-09-26 14:56:36 -04:00
1eb3d50c22 simplify/modernize 2022-09-26 13:38:35 -04:00
5ea37448b6 whitespace 2022-09-26 13:12:04 -04:00
6262f3c537 improve error message 2022-09-26 10:23:15 -04:00
30ddb2d4b4 Merge branch 'clean-master2' of github.com:julient31/lammps into llg-correction 2022-09-26 07:53:09 +02:00
ac6cb062e6 Completing the correction in fix langevin/spin. 2022-09-26 07:44:32 +02:00
d34d5139cb use CMakeLists.txt file that ships with PACE library
this sets the necessary define so that the compilation hack is no longer needed
2022-09-25 17:55:11 -04:00
cb92a1553c improve error messages 2022-09-25 17:45:18 -04:00
ca6733c345 remove unused lines 2022-09-25 17:10:49 -04:00
23b15ac4ca temporarily comment out code that breaks compilation 2022-09-25 17:10:44 -04:00
e1bc3a4ade apply clang-format 2022-09-25 16:02:56 -04:00
2e3fc4c054 Merge branch 'develop' into feature/pace-al 2022-09-25 16:01:48 -04:00
971f5672c9 add missing sllod initialization fixes 2022-09-25 07:11:25 -04:00
67a210e6d8 no need to include pair.h 2022-09-25 06:41:51 -04:00
084024cdc3 format 2022-09-25 06:41:37 -04:00
3a95a7b973 add utility to detect pending version tags in .. versionadded/changed:: 2022-09-25 03:51:54 -04:00
ebf69f2e79 avoid incorrect results with ghostneigh_flag on by skipping contributions from non-local i atoms 2022-09-24 21:09:27 -04:00
a02ab6eaa1 avoid memory corruption when using mliap unified with ghostneigh_flag == 1 2022-09-24 15:32:25 -04:00
bab115e993 apply C++11 virtual/override conventions 2022-09-24 14:48:31 -04:00
1885f7e42d delete redundant memory deallocation 2022-09-24 14:48:13 -04:00