Commit Graph

18544 Commits

Author SHA1 Message Date
69d9c5187e refactor group access, enable and apply clang-format 2022-04-15 15:29:43 -04:00
4b400fb4a6 overload count() function to pass in Region pointer directly 2022-04-14 22:00:50 -04:00
21f24ef572 Merge pull request #3218 from lammps/mdi-new-functions
MDI new functions
2022-04-14 20:48:51 -04:00
a0a82cad0b Merge pull request #3214 from stanmoore1/kk_tersoff_bugfix
Fix issues in Kokkos Tersoff and Stillinger-Weber pair styles
2022-04-14 17:28:59 -04:00
e66fb6a1c1 apply clang-format 2022-04-14 17:28:05 -04:00
56bfa90a69 adapt bpm/sphere atom style 2022-04-14 17:23:11 -04:00
111111b38b Merge branch 'develop' into atomvec-strings 2022-04-14 16:52:04 -04:00
26f6976568 move errorfunction complement approximation factor into shared namespace 2022-04-14 16:47:38 -04:00
8b31edb102 programming style updates and clang-format applied 2022-04-14 16:47:10 -04:00
81e203b5fa only allow "lj" and "real" units for now 2022-04-14 16:43:59 -04:00
4380ed23d1 documentation and LAMMPS homepage URL updates 2022-04-14 15:55:22 -04:00
0cfb26799c Fix copy/paste error 2022-04-14 13:47:57 -06:00
5bd86a05b2 Merge pull request #2906 from jtclemm/BPM
Adding package for bonded particle models
2022-04-14 15:43:14 -04:00
fccca3405a fixed bug in improper amoeba 2022-04-14 13:20:14 -06:00
c5565a4e02 Small tweaks 2022-04-14 13:16:44 -06:00
5c70f45feb updates to use new funcs from Python as well 2022-04-14 10:49:12 -06:00
29582f09a1 add missing update to property_atom function API 2022-04-14 12:34:58 -04:00
ac8d97d358 capture by reference 2022-04-14 12:27:45 -04:00
31178661c9 switch to C++11 compatible lambda function capture 2022-04-14 12:27:03 -04:00
095c610a3f no more need to explicitly initialize empty fields 2022-04-14 12:00:56 -04:00
500a3426ed "stringify" and "vectorize" per-atom data handling in Atom class 2022-04-14 11:31:20 -04:00
198d07e905 print warning when fix property/atom is issues before reading a restart 2022-04-14 11:06:35 -04:00
b16d48aa41 "stringify" and "vectorize" processing of per-atom attributs in AtomVec classes 2022-04-14 11:06:10 -04:00
9424c2558e enable and apply clang-format. minor cosmetic changes 2022-04-13 21:05:19 -04:00
2c7badfa43 debug for improper amoeba 2022-04-13 17:05:44 -06:00
bc2b600f09 changes to use new MDI library functions 2022-04-13 16:26:48 -06:00
578a9ab161 bug fix for bondangle term 2022-04-13 14:52:01 -06:00
30914a73fb Update error messages 2022-04-13 14:10:52 -06:00
44f67330e2 Port changes to other flavors of Tersoff 2022-04-13 13:50:49 -06:00
abb9880dc6 degugging on angle term 2022-04-13 12:31:23 -06:00
c9ab5ebbf5 cosmetic 2022-04-13 12:59:54 -04:00
2804de8c26 fix refactoring bug 2022-04-13 12:59:41 -04:00
0f1097d7e6 recover read_restart and read_data capability for fix property/atom 2022-04-13 12:41:40 -04:00
2d5fadd88f Switch to const ref to help compiler 2022-04-13 10:27:41 -06:00
230bed0bc4 fix crash with multielement inner cutoff 2022-04-13 09:49:13 -06:00
9e94722987 Remove full neigh option in Kokkos Tersoff and SW pair styles 2022-04-13 08:14:02 -06:00
ef4e41d2a2 programming style and format updates 2022-04-12 22:52:07 -04:00
09b08ecd85 whitespace 2022-04-12 18:36:51 -04:00
e89303c202 Fix compile error with Kokkos CUDA 2022-04-12 16:31:21 -06:00
622a4a6d51 Overallocate slightly to reduce memory reallocs 2022-04-12 16:20:21 -06:00
2998462743 Add const 2022-04-12 16:07:37 -06:00
f64d405ad8 Fixing remaining errors/warnings in doc build 2022-04-12 15:59:38 -06:00
90a6a3c125 Fix typo 2022-04-12 15:57:49 -06:00
2fa99703bf Fix issues in Kokkos Tersoff and SW pair styles 2022-04-12 15:49:28 -06:00
616349c27b Merge branch 'develop' into dielectric-updates 2022-04-12 16:33:02 -05:00
8aa4c5a0e2 debugging on angle term forces 2022-04-12 12:53:51 -06:00
929e46b5c7 remove dead code 2022-04-12 11:06:28 -04:00
e1a2423f2e modernize, initialize pointers, apply clang-format 2022-04-12 11:06:18 -04:00
fd348f3a81 added bending buckling angle style cpp file 2022-04-12 15:28:32 +01:00
d9b34d5018 more sign flipping 2022-04-11 17:03:49 -06:00