Commit Graph

32822 Commits

Author SHA1 Message Date
dd110176d1 Merge pull request #3395 from akohlmey/fix-reaxff-species-update
Fix reaxff/species update for dynamic groups and empty groups
2022-08-12 14:49:26 -04:00
73bee3c53c add discussion of neighbor list settings during minimizations. minor tweaks 2022-08-12 14:47:08 -04:00
4c975c34c1 Deleted the parenthesis instead of the space... 2022-08-12 11:55:30 -05:00
d1429d1b11 Merge branch 'lammps:develop' into fortran-tinkering 2022-08-12 11:47:27 -05:00
257b551c92 Missed lammps_version implicit none 2022-08-12 11:44:55 -05:00
c6972d483f Made spacing consistent; added IMPLICIT NONE where it was not implied already and removed it where it was redundant 2022-08-12 11:43:21 -05:00
c2ded124a5 fixed spacing 2022-08-12 11:34:29 -05:00
05be7fe8ca Possibly-read-for-inclusion version of extract_global and associated documentation 2022-08-12 11:33:28 -05:00
3588c0a7cc switched fsemi to gauss-legendre quadrature, 10 quadrature points seem fully converged (vs 100 trapezoid points) 2022-08-12 16:53:52 +02:00
09b3cbafdc correctly handle the case where there are no atoms in the fix group 2022-08-12 10:46:07 -04:00
12c28c393d support dynamic groups, but only if nrepeat == 1 2022-08-12 10:45:35 -04:00
9d89bc8f82 Typo fixes/etc. in documentation 2022-08-12 09:40:29 -05:00
cc5edbac47 removed naive bisection and reduced quadrature points 2022-08-12 16:17:10 +02:00
e160fc841c added gauss-legendre quadrature framework 2022-08-12 16:08:19 +02:00
9b0c2d82c3 Missing comma 2022-08-12 08:23:20 -05:00
88a3a38640 I think I finally fixed extract_global; we'll check it in the morning 2022-08-12 00:04:25 -05:00
923976f154 Merge remote-tracking branch 'refs/remotes/origin/improve-errors' into improve-errors 2022-08-12 12:18:02 +08:00
6d624b782d made some changes on neighbor.cpp 2022-08-12 12:12:22 +08:00
c869a7aac2 update OpenMP suppressions for gcc-12 2022-08-11 23:36:25 -04:00
1c63159a80 add test input for amoeba angle style 2022-08-11 22:54:42 -04:00
e5219e6a10 fix bug in energy tally for 4-atom angle term 2022-08-11 22:50:57 -04:00
4151a1af02 Lots of tinkering with extract_global; back to square 1 2022-08-11 17:46:21 -05:00
7f9e6ce16a Merge branch 'develop' into shake-with-minimize 2022-08-11 13:21:08 -04:00
0e2b51010c simplify 2022-08-11 09:51:37 -04:00
0b38cbea2d add get_dump_by_index() function 2022-08-11 09:46:22 -04:00
871a6d5cf7 more consistent output format 2022-08-11 07:54:47 -04:00
0c9964dd0e accept 'neigh_modify every 1 delay 0' regardless of "check" setting
downgrade the "WARNING" message to a regular output
(and thus be less confusing to new LAMMPS users).
2022-08-11 07:54:36 -04:00
6e8c24372e Merge branch 'lammps:develop' into improve-errors 2022-08-11 19:19:13 +08:00
af1c772157 made some changes on minimize.cpp 2022-08-11 19:08:11 +08:00
d41d5960e4 simplify and modernize 2022-08-11 04:07:49 -04:00
f9352e6ad7 update unit test for groups 2022-08-11 03:56:29 -04:00
2eb6ff1111 allow const char * argument 2022-08-11 03:45:56 -04:00
91b98484ad modernize and simplify 2022-08-11 03:45:36 -04:00
aab62d5ed9 add get_dump_list() function 2022-08-11 03:14:59 -04:00
c574ed51b5 modernize and simplify 2022-08-11 03:04:58 -04:00
9bd45e70da simplify and modernize 2022-08-11 03:00:37 -04:00
2b16a8d1c6 document how to update code that uses Output::find_dump() 2022-08-11 02:19:18 -04:00
e8e6beed50 find dump is no longer used 2022-08-11 01:52:42 -04:00
76123d3347 change hyper command to use get_dump_by_id() instead of find_dump() 2022-08-11 01:52:27 -04:00
af5eacfe8c Merge branch 'lammps:develop' into mliappy_unified 2022-08-10 21:58:37 -06:00
208caacb89 Merge pull request #3390 from hammondkd/fortran2_updates
Fixed a bug (xz and yz reversed) in LAMMPS.F90 and changed mpif90 to …
2022-08-10 20:49:17 -04:00
b565d10a3d Merge pull request #3388 from chemshift/mliap-bug-3204
Mliap bug 3204
2022-08-10 19:33:59 -04:00
b191e29561 Work in progress for extract_global; committing but will probably undo later 2022-08-10 17:56:28 -05:00
c9c3f68bdf Merge pull request #3387 from akohlmey/collected-small-changes
Collected small changes and bug fixes
2022-08-10 18:34:52 -04:00
9fdc96e0dd add QE dir 2022-08-10 15:48:53 -06:00
f1cca7d37d Update __init__.py 2022-08-10 12:22:29 -06:00
d178a00ff6 Merge branch 'fortran-tinkering' of github.com:hammondkd/lammps into fortran-tinkering
Finishing the edits
2022-08-10 11:39:31 -05:00
756074c073 Merge edits from two computers 2022-08-10 11:39:23 -05:00
36167ab81e Merge branch 'fortran-tinkering' of github.com:hammondkd/lammps into fortran-tinkering
made edits on two computers / fixing
2022-08-10 11:37:37 -05:00
89b9967f2c Added part of lmp_extract_global 2022-08-10 11:37:15 -05:00