Commit Graph

32822 Commits

Author SHA1 Message Date
b24d01fae6 remove broken links in the manual from removing packages 2022-04-08 17:27:01 -04:00
d0edc48a65 update purge list with removed source files from MESSAGE package 2022-04-08 17:26:16 -04:00
f405c7acc9 add deprecation handling removed commands and styles 2022-04-08 17:25:56 -04:00
2d2660487d flip signs for forces instead of gradients 2022-04-08 15:23:17 -06:00
6ef7d19fc0 Added a test for bgrid/local 2022-04-08 15:05:17 -06:00
3039d10742 new key files for water box example 2022-04-08 15:00:54 -06:00
ef7c6a580e simplify 2022-04-08 16:51:52 -04:00
2c509d96a6 we are not compatible with those old versions for the MDI library 2022-04-08 16:43:41 -04:00
07aecb3678 whitespace fixes and apply clang-format 2022-04-08 16:36:21 -04:00
bfaa1e9ed0 whitespace 2022-04-08 16:28:57 -04:00
a7ccb16aa8 Merge pull request #3192 from davidfir3/fep_ta
New feature compute fep/ta
2022-04-08 16:27:12 -04:00
33798b99a4 remove debug print statement 2022-04-08 14:08:51 -06:00
caa977e869 Remove redundant calls 2022-04-08 13:28:14 -06:00
f8ec0365c6 Fix a few more issues 2022-04-08 12:52:26 -06:00
d99b1258e3 remove volatile to fix build error from Kokkos commit (5574130fb333ac1745a52d4a6383ac95c64bdc0f) 2022-04-08 11:13:31 -05:00
fe502c71d3 moved contents of compute to mesolj function for future modularity 2022-04-08 16:53:12 +01:00
b73437aa63 Merge pull request #3208 from arghdos/develop
Fix for building GPU backend on ROCm 5.1+
2022-04-08 07:19:27 -04:00
4efdfaa8f3 simplify and make consistent, fix time based dump bug 2022-04-08 07:05:30 -04:00
8d04b0f9ac added torque correction from chain end 2022-04-08 10:40:08 +01:00
6f53663b63 inline spline functions + weight for performance 2022-04-08 10:17:30 +01:00
e1ed62f8bb added end types to pair_style arguments to find segment - chain end interactions 2022-04-08 10:12:38 +01:00
cc2b888f1d reduced quadrature points for end interactions to 10 2022-04-08 09:56:08 +01:00
eb69bd20b1 made rhomin a global macro 2022-04-08 09:54:22 +01:00
bd4d92c76d entry for mdi sub-dir in Examples.rst 2022-04-07 16:02:45 -06:00
77565add6e Add C++14 to Makefile build system
Change-Id: I24f72b4aaca93a49877775c3d181507c83cd7f82
2022-04-07 17:54:20 -04:00
ab0e5d5568 Fix for building GPU backend on ROCm 5.0+
Change-Id: I32ad9be86d6a0467ccae555a1d0272813c905e97
2022-04-07 17:48:03 -04:00
792ae5dae5 remove src/MESSAGE package and supporting dirs and doc pages 2022-04-07 15:44:48 -06:00
f40180f7fb lib README edit 2022-04-07 15:15:50 -06:00
adef9b7747 add log files to examples/mdi 2022-04-07 15:13:29 -06:00
40aa146624 Prune unused code and fix virial issue 2022-04-07 15:05:07 -06:00
0b6aa59621 updated doc pages 2022-04-07 14:42:58 -06:00
e2f25a96e1 spelling 2022-04-07 14:50:33 -04:00
ddb6350fe8 Remove unused var 2022-04-07 10:53:38 -06:00
9b969648d5 add kimplugin source and CMake based build support 2022-04-07 12:51:06 -04:00
2956aee8dc Small tweaks 2022-04-07 10:45:50 -06:00
4f67f586d0 Fix memory issue and leftover debugging 2022-04-07 10:02:58 -06:00
fdf59e6a03 more debugging for plugin library mode 2022-04-07 09:26:43 -06:00
f5add95083 fix syntax error 2022-04-07 06:08:54 -04:00
8a6e6fe523 make dump style yaml test dependent on it being available 2022-04-07 05:59:31 -04:00
3970942028 add test for yaml dump style 2022-04-07 02:44:17 -04:00
0e8e1171c6 add unit test for yaml style thermo output and updated logfile class 2022-04-07 02:07:05 -04:00
59fa0be35f update for recent changes in thermo output 2022-04-07 02:06:55 -04:00
98b908387f add unit test for yaml style thermo output and updated logfile class 2022-04-07 02:05:47 -04:00
601bdadf44 update for recent changes in thermo output 2022-04-07 02:05:05 -04:00
082254455b improve confusing error messages 2022-04-07 00:37:30 -04:00
58ecf03e5d correct yaml import 2022-04-07 00:37:18 -04:00
348ee5299e implement a dump style yaml 2022-04-06 19:11:55 -04:00
e944ecd1c2 correct docs 2022-04-06 19:10:16 -04:00
207b34ae12 allow for pre-timestepping comm with engine, e.g. for force eval 2022-04-06 16:38:58 -06:00
b1e92c9ec6 update YAML reading python example to read faster using libyaml. 2022-04-06 17:38:25 -04:00