Commit Graph

32822 Commits

Author SHA1 Message Date
4f0cde40fd White no longer exists 2022-01-19 10:16:53 -07:00
4cd5c40374 Merge pull request #3089 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-01-19 11:44:33 -05:00
7573e60a1e Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2022-01-19 10:21:12 -05:00
c85cdb2732 always fall back to using the .so extension if available in the LAMMPS module folder 2022-01-19 10:11:16 -05:00
7676f66674 modernize potential file parsing 2022-01-19 06:29:27 -05:00
f5ad91f9fe minor tweaks 2022-01-19 06:28:53 -05:00
0595e4d7cd refactor parsing of pair style list parameter file 2022-01-19 00:24:01 -05:00
c4c3b545b2 modernize fix gle matrix file reading 2022-01-18 19:55:50 -05:00
e22f62f6db add some metadata for fix gle matrix files 2022-01-18 19:55:30 -05:00
b890b564ca modernize electron stopping file reader 2022-01-18 16:48:26 -05:00
ef13455d6b add some metadata tags 2022-01-18 16:48:07 -05:00
0099d2584b Apply override to Integrator classes 2022-01-18 15:17:04 -05:00
778879a0eb Apply override to Body classes 2022-01-18 14:56:44 -05:00
1792b3b0cf Apply override to Reader classes 2022-01-18 14:39:31 -05:00
d19f799585 Apply override to Region classes 2022-01-18 14:31:29 -05:00
576f2266ae Mark virtual destructors in derived as override
Following C++ Core Guideline C.128
2022-01-18 14:28:25 -05:00
be7e6d0939 Avoid std::string copies 2022-01-18 13:22:55 -05:00
38bcc493b0 simplify and modernize CMAP file parser 2022-01-18 10:28:40 -05:00
389c35a2d3 use alternate method to create triclinic box for unit test 2022-01-18 09:09:37 -05:00
1c8f427e8a detect when MSM::setup() is called before proper initialization and error out 2022-01-18 09:09:19 -05:00
29b5c2659c source code formatting 2022-01-18 09:04:04 -05:00
c1f7685c98 Revert "before changing box settings, it must be initialized at least once"
Looking for alternate solution since this change has
too many unwanted side effects.

This reverts commit 2e85233b11.
2022-01-18 08:30:54 -05:00
2e85233b11 before changing box settings, it must be initialized at least once
otherwise change_box would not really be needed,
but commands like boundary can (still) be used
2022-01-18 07:20:28 -05:00
752552e0f8 remove duplicate code 2022-01-18 06:39:20 -05:00
a02e11040d whitespace 2022-01-18 06:34:57 -05:00
f0f4a8e6dc plug some memory leaks in MSM kspace style(s) 2022-01-18 06:01:32 -05:00
241a44f1af another workaround for rerun 2022-01-18 04:56:47 -05:00
e1d028ec88 Merge pull request #3087 from akohlmey/pair-harmonic
Add new pair styles harmonic/cut for repulsive-only harmonic interaction
2022-01-17 18:53:35 -05:00
5530927bd4 Merge pull request #3088 from stanmoore1/kk_hip_fixes
Fix Kokkos HIP compile issues
2022-01-17 18:07:29 -05:00
af231d5447 Fix comments in Makefiles 2022-01-17 08:54:17 -07:00
8b89be6061 Kokkos SNAP tuning for HIP 2022-01-17 08:49:00 -07:00
a93e5baa73 Add Kokkos HIP Makefiles 2022-01-17 08:44:49 -07:00
cb796e8b60 Fix HIP compile issues 2022-01-17 08:21:52 -07:00
dc6e558191 use Tokenizer class to parse bond colors 2022-01-16 20:20:07 -05:00
0eeb3b203c add tests for molecule command 2022-01-16 16:50:23 -05:00
943fe487b5 update whitespace and argument formats for longer source lines 2022-01-16 15:36:01 -05:00
1e7969c7b9 add new pair styles harmonic/cut and harmonic/cut/omp 2022-01-15 19:34:47 -05:00
aa71ea6c40 Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2022-01-14 20:25:05 -05:00
e271a54802 re-enable using rerun after the changes from PR #3052 2022-01-14 20:25:00 -05:00
c17eb14739 Fixing memory leak and wrong label 2022-01-14 15:45:18 -07:00
11cc8a6a59 whitespace 2022-01-14 15:59:05 -05:00
ed702b9309 don't allow exceptions to "escape" a destructor 2022-01-14 15:58:57 -05:00
dcb1ddb282 remove redundant code 2022-01-14 14:55:13 -05:00
2213eb8d3f use enum with symbolic constants instead of numbers 2022-01-14 14:45:12 -05:00
7afa22f045 check return values for errors 2022-01-14 13:02:15 -05:00
0540b93123 fixed division by zero issue in geometry 2022-01-13 17:15:45 +00:00
524d86605a Fixing reference in documentation 2022-01-12 10:56:30 -07:00
19abc5d329 Merge branch 'develop' into BPM 2022-01-12 10:52:11 -07:00
b1ed5e5b27 memory optimised with ragged arrays, implemented 3D ragged arrays 2022-01-12 17:02:09 +00:00
698256f4fe update fedora singularity image to Fedora 35 2022-01-12 08:17:54 -05:00