Commit Graph

16673 Commits

Author SHA1 Message Date
b51d06b3ea Change default binsize for Kokkos if running on GPUs 2019-03-12 15:33:28 -06:00
c3acb3e4ef Merge pull request #1361 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2019-03-08 12:11:59 -05:00
4e2ebf7feb Merge pull request #1352 from mkanski/reax_var_atoms
A partial fix for ReaxFF failure when the number of atoms increases during a simulation
2019-03-07 15:44:15 -05:00
2077df5465 Merge pull request #1363 from stanmoore1/kk_deprecated
Remove deprecated code in KOKKOS package
2019-03-07 15:42:58 -05:00
e62746ef27 protect group command against options that require unavailble properties resulting in segfaults 2019-03-07 15:38:23 -05:00
a5c93e75a5 ignore src/lmpgitversion.h 2019-03-07 15:12:22 -05:00
3bc815efe8 fix a memory leak in fix bocs 2019-03-07 15:11:33 -05:00
9cb2a56194 Remove deprecated Kokkos code 2019-03-07 10:47:40 -07:00
0edc588458 Replace deprecated Kokkos capacity() with span() 2019-03-07 10:23:17 -07:00
f0e48931e4 Remove deprecated KOKKO_HAVE macros 2019-03-07 10:17:32 -07:00
9408dd6e92 use simpler way whether we are inside a git checkout in conventional build 2019-03-06 18:41:43 -05:00
4e632d1b79 implement another suggestion from @junghans 2019-03-06 17:32:08 -05:00
2918dae87e correct variable name and path to find the local .git folder 2019-03-06 17:12:41 -05:00
fe56cf04bc simplify the detection of whether the source folder is checked out from a local git repo 2019-03-06 17:04:14 -05:00
436e02aa6e small corrections/clarifications to the pull request template 2019-03-06 16:59:17 -05:00
c0ce8591e7 Merge pull request #1358 from ellio167/kim-link-update
Update openkim.org urls in various places
2019-03-06 12:22:12 -05:00
b628e3b1b6 Update openkim.org urls in various places 2019-03-06 10:26:03 -06:00
4a17cb3467 Merge pull request #1357 from akohlmey/embed-git-revision
Embed git branch and revision info into LAMMPS class
2019-03-05 23:31:16 -05:00
c5a3b034ce implement various suggestions to improve the use of git information gathered 2019-03-05 17:29:34 -05:00
bfa950a7e9 Added initialization for grown arrays 2019-03-05 22:40:10 +01:00
390fc873bc Merge pull request #1355 from julient31/bfo_spin
bugfix update for SPIN package
2019-03-05 14:27:28 -05:00
6b8a768f6c Merge pull request #1356 from akohlmey/address-user-smtbq-vla-issue
Address Variable-Length-Array issues, memory leaks, uninitialized data access issues in USER-SMTBQ
2019-03-05 14:26:30 -05:00
1c7d191988 also print git version (if available) in multi-partition runs and in help message 2019-03-05 09:03:12 -05:00
1e573bd557 when compiling LAMMPS in a git checkout, embed and print git branch and revision info into the executable 2019-03-05 08:35:53 -05:00
bc4a80d9e8 Merge pull request #1354 from akohlmey/collected-small-fixes
Collected small fixes and updates for the next patch release
2019-03-05 00:55:36 -05:00
fa7b5ecfa3 disable chimet array in pair style smtbq, which was never set anywhere 2019-03-05 00:45:40 -05:00
6ed8fbbd51 handle uninitialized data access issues and out-of-bounds access for single element calculations 2019-03-04 18:01:55 -05:00
0d1524526a work around the remaining variable length array cases. fix an off-by-one error, too. 2019-03-04 17:26:55 -05:00
ab0c35be93 Commit JT 030419
- correction of pair_spin calculations
- corrects an error between i and ii lists in single/pair calc.
2019-03-04 08:04:11 -07:00
849e52040a Merge branch 'clean-master2' of github.com:julient31/lammps into bfo_spin 2019-03-04 07:51:12 -07:00
5ecbb8bd01 fix int vs. bigint issue and add NULL file pointer check to dynamical_matrix 2019-03-01 09:46:13 -05:00
30ee2f3d78 avoid windows portability issues with int32_t 2019-03-01 09:37:38 -05:00
0f0a65bb48 plug small memory leak in USER-ADIOS 2019-03-01 09:37:33 -05:00
d8845b6817 Added initialization of the entire num_bonds and num_hbonds arrays 2019-03-01 13:13:11 +01:00
5486896876 Merge pull request #1350 from akohlmey/next-patch-release
Step version string for next patch release
patch_28Feb2019
2019-02-28 17:56:51 -05:00
47b0c77dd9 replace variable length arrays with std::vector 2019-02-28 17:53:50 -05:00
fbc9cf8354 fix huge memory leak 2019-02-28 17:53:17 -05:00
c555f7e2ed update permissions 2019-02-28 17:52:53 -05:00
14e6c126a8 Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix
add command to compute the Dynamical Matrix
2019-02-28 17:08:36 -05:00
50fef541c2 add x-ref 2019-02-28 15:50:59 -05:00
5fd033c0a2 add one more false positive required by recent changes 2019-02-28 15:49:48 -05:00
1d2eab5e1b update attribution information in Package details documentation 2019-02-28 15:26:36 -05:00
7062bc862e remove third_order command and ASE based examples to be added in a new pull request 2019-02-28 15:21:48 -05:00
9298fe7868 fix segfault and copy-n-modify issues with third order command 2019-02-28 14:45:42 -05:00
16946d8c6d integrate dynamical_matrix command into LAMMPS manual 2019-02-28 14:45:07 -05:00
286112ffbc count each force computation as one simulation step. this avoids accessing uninitialized data, too. 2019-02-28 11:00:55 -05:00
326a97624e Merge pull request #1317 from ornladios/adios2-master
USER-ADIOS package with ADIOS 2.x
2019-02-27 17:24:12 -05:00
80392224cd Merge pull request #1351 from ellio167/kim-2.0.1
Bump KIM API version to 2.0.1
2019-02-27 17:21:30 -05:00
b60f0f754c small tweaks to USER-ADIOS docs 2019-02-27 17:18:08 -05:00
6bd56c2a85 update author attribution 2019-02-27 17:08:13 -05:00