Commit Graph

14010 Commits

Author SHA1 Message Date
b95cf658c7 remove faulty line of code, left in by accident 2018-01-16 14:10:46 -05:00
709ce8a230 Merge branch 'neigh-identical-check' into couple-simple
# Conflicts:
#	src/create_bonds.cpp
#	src/delete_atoms.cpp
2018-01-16 14:09:21 -05:00
2ad823ffd4 correct check for identical requests 2018-01-16 14:08:18 -05:00
8d37c89cb6 different bug fix for create_bonds, delete_atoms neigh list issue 2018-01-16 11:32:37 -07:00
21ff4407ab update of COUPLE/simple examples 2018-01-16 10:48:38 -07:00
e798cdf31f Merge pull request #771 from stanmoore1/reax_example
Add ReaxFF Example
2018-01-16 09:05:36 -07:00
97dd812647 Merge pull request #769 from rbberger/cmake_compilation_fixes
CMake compilation fixes
2018-01-16 09:04:04 -07:00
e07a6d1e34 Merge pull request #768 from akohlmey/collected-doc-fixes
collected documentation fixes
2018-01-16 09:03:45 -07:00
6e37272c9d Merge pull request #764 from akohlmey/improved-variable-error-reporting
Improved error messages when defining or evaluating variables
2018-01-16 09:02:20 -07:00
6bd6e62767 Merge pull request #763 from stanmoore1/kk_neighlist
Enhance Kokkos Neighbor lists
2018-01-16 09:01:15 -07:00
57dd6c78c1 Merge pull request #761 from stanmoore1/kk_snap
Kokkos version of Pair SNAP and ZBL
2018-01-16 09:00:52 -07:00
9e413bf57a Merge pull request #760 from akohlmey/info-coeffs
New "coeffs" keyword added to "info" command
2018-01-16 09:00:34 -07:00
b374813104 Add reax example 2018-01-16 08:50:30 -07:00
72b479d42e Add missing return value in pair_snap_kokkos 2018-01-15 11:01:07 -07:00
a5998179bf Fix issues with Kokkos skip lists 2018-01-15 08:23:39 -07:00
f37f4f0041 support more cases where the variable name is reported on errors 2018-01-14 17:56:03 -05:00
d2983caad4 CMake: limit visibility of COLVARS lepton library headers 2018-01-14 18:01:19 +01:00
2b7c233791 Simplify change to CMake build for USER-COLVARS 2018-01-14 08:44:50 +01:00
9e35e76b8c Fix issues in Kokkos npair_halffull and npair_skip 2018-01-13 21:32:59 -07:00
7a78875911 Fix issues in Kokkos pair snap and zbl 2018-01-13 21:31:11 -07:00
1cfc3118cc CMake: remove BUILD_SHARED_LIBS requirement from PYTHON package 2018-01-13 22:17:23 +01:00
23e8fb0542 Update CMake build for USER-COLVARS 2018-01-13 21:57:24 +01:00
72eb2dab52 Add missing math.h header 2018-01-13 20:41:05 +01:00
52d3e98f3b Fix issue in npair_skip_kokkos 2018-01-12 15:45:24 -07:00
6e3acce3be Relax restriction in neighbor.cpp 2018-01-12 15:44:11 -07:00
1ec54827d6 Add Kokkos halffull neighbor list capability 2018-01-12 15:41:59 -07:00
61ebf6265a address some formatting/markup issues reported by Nandor Tamaskovics 2018-01-12 12:50:02 -05:00
190cc78034 add dummy doc files for not-yet-implemented features 2018-01-12 12:29:03 -05:00
5863f115dd correctly escape 'a_ ' text, which is not a reference unlike 'a_b ' 2018-01-12 12:26:50 -05:00
75d259f5ee improve PDF reader compatibility for the created PDF file. 2018-01-12 12:00:53 -05:00
3b1b9a2cbf replace non-ASCII quotation marks with ASCII equivalent 2018-01-12 11:30:27 -05:00
26917280be state name of the affected variable in error messages where possible 2018-01-11 15:01:08 -05:00
45674e6cd3 Add Kokkos skip list capability 2018-01-11 10:07:44 -07:00
22d2d1cdf3 Fix issue in pair_snap_kokkos memory_usage 2018-01-11 10:01:34 -07:00
0d7bee40ae Add newline at end of pair_snap_kokkos_impl.h 2018-01-11 09:41:37 -07:00
db1ed32a51 Fix minor issues in pair_snap_kokkos 2018-01-11 09:39:53 -07:00
d7d087ae67 Fix issue with peratom energy/virial in pair_snap_kokkos 2018-01-10 10:20:40 -07:00
92e2df74c1 Fix bug in Kokkos peratom energy/virial with newton on 2018-01-10 10:20:12 -07:00
2047ae76e3 Move compute_bi outside of j-loop 2018-01-09 17:05:57 -07:00
4adbb882b3 Temper SNAP output 2018-01-09 17:05:34 -07:00
275c08453f Add Kokkos versions of pair_style snap and zbl 2018-01-09 17:03:49 -07:00
91107cc1f3 add a "coeffs" keyword to the info command for debugging "All XXX coeffs are not set" errors. 2018-01-09 12:47:33 -05:00
1bd9e175e9 Merge pull request #749 from akohlmey/collected-bugfixes-and-updates
Collected bugfixes and updates for the next patch release
2018-01-08 09:20:18 -07:00
9e9cfe5869 Merge pull request #754 from rbberger/cmake_kokkos_bugfix
CMake bugfixes for KOKKOS builds
2018-01-08 09:16:43 -07:00
85ff0c1e46 Merge pull request #750 from stanmoore1/kk_fences
Add Kokkos thread fences to comm pack/unpack routines
2018-01-08 09:16:16 -07:00
cc9b6118b8 Merge pull request #748 from stanmoore1/kk_docs
Update Kokkos docs
2018-01-08 09:15:36 -07:00
09bed0c09a Merge pull request #747 from stanmoore1/kk_reax_hist
Fix broken charge history in fix qeq/reax/kk
2018-01-08 09:15:21 -07:00
1b51efd6b8 Merge pull request #744 from akohlmey/doc-update
Documentation build updates
2018-01-08 09:15:02 -07:00
8888b05b18 Merge pull request #742 from rbberger/fix_python_move
Fix python/move
2018-01-08 09:14:36 -07:00
3bb8294f31 Merge pull request #718 from timattox/USER-DPD_es_RNG
USER-DPD: External State RNG
2018-01-08 09:13:11 -07:00