Commit Graph

27129 Commits

Author SHA1 Message Date
b9cc8c8d24 Merge branch 'master' into collected-small-changes 2021-07-20 18:14:02 -04:00
2718596d65 Merge pull request #2835 from ohenrich/cg-dna
Documentation: CG-DNA package
2021-07-20 18:03:34 -04:00
acfe590343 whitespace 2021-07-20 16:03:33 -04:00
06d5bcb19b Merge branch 'master' into collected-small-changes 2021-07-20 16:02:46 -04:00
2a0c6ad979 Merge pull request #2841 from donatas-surblys/heat-flux-virial-tally
A new tally compute to obtain virial heat flow from group 2 to group 1
2021-07-20 16:01:30 -04:00
d8ca3e4b16 add support for automatically downloading and building libquip 2021-07-20 16:00:42 -04:00
eeea566093 correct typo 2021-07-20 14:32:30 -04:00
b6e749f7fc reformat with clang-format 2021-07-20 14:27:29 -04:00
64a85fc762 Merge pull request #2842 from wmbrownIntel/user-intel-llvm
Intel Package Update for CLANG/LLVM-based compiler
2021-07-20 14:22:33 -04:00
2a4b60d597 in the output info section: flux -> flow 2021-07-20 18:03:11 +09:00
6fd1cda2a6 update documentaion for heat/flux/tally and heat/flux/virial/tally 2021-07-20 17:48:12 +09:00
cfd9e31d18 add links to heat/flux/virial/tally and add short descriptions for tally computes 2021-07-20 13:31:41 +09:00
1345c25f41 Fixing issue where __INTEL_COMPILER not defined for next-gen (LLVM-based) in tersoff. 2021-07-19 17:49:11 -07:00
596845c8ef Merge branch 'master' of https://github.com/lammps/lammps into user-intel-llvm 2021-07-19 11:25:42 -07:00
d739c3bede Fixes to the Intel package to remove errors and warnings with clang-based compiler and support alternate preprocessor defines for the next-gen Intel compiler (currently not recommended for performance).. 2021-07-19 11:16:09 -07:00
5c4fb41ac0 Merge pull request #2839 from craabreu/respa_bug_fix
Fixed bug in fix np[ht] with runstyle respa
2021-07-19 11:02:25 -04:00
ef72ea9dd9 Fixed whitespace issues 2021-07-19 11:49:27 +01:00
cf85fba37c Corrected text in warning message 2021-07-19 11:27:08 +01:00
2881f95d7a Merge branch 'cg-dna' of https://github.com/ohenrich/lammps into cg-dna 2021-07-19 11:23:50 +01:00
170b5be906 Added missing pointer name, reformatting 2021-07-19 11:23:27 +01:00
15b3b6445e Updated tests and documentation, added warning message 2021-07-19 11:22:06 +01:00
f247a2aedf fix issues with pair style more/soft and reformat 2021-07-19 01:04:35 -04:00
0cb09786b6 need to make this functions virtual since they are overridded by morse/soft 2021-07-19 01:02:52 -04:00
b03f25a650 simplify 2021-07-19 01:02:06 -04:00
76ec9b8616 port changes from dump netcdf to dump netcdf/mpiio 2021-07-18 19:04:08 -04:00
1f9e0adfe9 more reformatting 2021-07-18 18:37:27 -04:00
536ba492fb error out on trying to dump strings or variables 2021-07-18 17:47:01 -04:00
ce7cca2ae4 use scoped enums from Dump and Thermo classes instead of replicating them, reformat 2021-07-18 17:44:06 -04:00
2eff15d1e6 move data type enum to header so it can be used in dump netcdf 2021-07-18 17:41:14 -04:00
418acea543 support wildcard dump keywords, simplify, modernize, reformat 2021-07-18 16:59:58 -04:00
3c0a2345cc simplify, reformat, and better error messages 2021-07-18 16:42:43 -04:00
8ed608abbf Fixed RESPA/kspace/barostat bug in BOCS, DRUDE, and USER-MISC 2021-07-18 16:22:25 -03:00
fa7ae99511 Fixed bug in fix np[ht] with runstyle respa 2021-07-18 12:48:05 -03:00
57df891572 avoid duplicate label 2021-07-17 07:49:41 -04:00
1ff90a9e8c ignore Testing folder in root dir (created when running "ctest --test-dir build") 2021-07-17 07:45:53 -04:00
504b756a9a recover compilation. we don't use the energy, only the force 2021-07-16 22:06:39 -04:00
6d292b1bf2 small tweaks 2021-07-16 14:51:27 -04:00
034c337aaf reformat 2021-07-16 12:05:45 -04:00
ef2e5dbb73 reformat 2021-07-16 10:56:54 -04:00
a4d58462df simplify and avoid failure with -ffast-math where NaN signaling doesn't work reliably 2021-07-16 10:54:59 -04:00
fb1e757524 Merge branch 'lammps:master' into cg-dna 2021-07-16 12:58:26 +01:00
b7a17dc25d Added warning message in documentation and dsDNA ring test in examples 2021-07-16 12:57:21 +01:00
b00a281708 a tally compute to obtain virial heat flux into group 1 due to group 2 2021-07-16 14:29:07 +09:00
bed363cda9 Merge branch 'master' into collected-small-changes 2021-07-15 17:24:15 -04:00
95792ac928 Merge pull request #2833 from athomps/delete-last-mol
Delete last mol
2021-07-15 17:16:48 -04:00
2a61f72790 Merge pull request #2827 from ohenrich/cg-dna
CG-DNA: New Class AtomVecOxdna
2021-07-15 16:43:08 -04:00
5be930fa76 cleanup 2021-07-15 16:40:15 -04:00
637eef51b9 reformat 2021-07-15 15:45:01 -04:00
dc70f97ad4 restore changes from upstream that were undone by incorrectly resolving merge conflicts 2021-07-15 15:44:35 -04:00
d97ea4ebf6 make dependency of CG-DNA on ASPHERE and MOLECULE a hard dependency 2021-07-15 15:42:50 -04:00