Commit Graph

24085 Commits

Author SHA1 Message Date
b9f5de3ca0 update URLs in README file 2020-11-25 16:51:43 -05:00
f0e4f9932f whitespace fixes 2020-11-25 16:51:43 -05:00
7f6638b681 more unittest docs 2020-11-25 16:51:43 -05:00
583d3823d8 address spelling issues 2020-11-25 16:51:42 -05:00
a8275e0e51 fix issues with compute stress/atom docs 2020-11-25 16:51:42 -05:00
2b6c995e12 more unittest docs 2020-11-25 16:51:42 -05:00
bbe50ab5c1 more documentation for adding unittest 2020-11-25 16:51:42 -05:00
2a8cc331e7 add test for "newton" command to match the c-library interface tests 2020-11-25 16:51:42 -05:00
27144ce0dd more details about mass and time units when using reduced units 2020-11-25 16:51:42 -05:00
569a000e6b reformat unittest sources with clang-format 2020-11-25 16:51:41 -05:00
a8b60848c3 small updates. 2020-11-25 16:51:41 -05:00
36ae363b8b Start section in the programmer guide describing how to add unit tests 2020-11-25 16:51:41 -05:00
9d7319dd2b whitespace fixes 2020-11-25 16:51:41 -05:00
800fb167f4 fix small render issue 2020-11-25 16:51:41 -05:00
849e5ffee2 add option to extract newton_bond/newton_pair settings 2020-11-25 16:51:37 -05:00
7cb644b425 Merge pull request #2491 from rbberger/evflag_corrections
Collected small changes and fixes
2020-11-24 14:46:00 -05:00
109cee1ce1 Doc string update for Pair::ev_setup() 2020-11-24 14:24:53 -05:00
c7d8e93f5a Add missing init of virial 2020-11-24 13:55:10 -05:00
af0df870f4 Fix bug introduced by uninitialized moloffset 2020-11-24 13:55:10 -05:00
d59aba43e7 Merge pull request #2469 from yafshar/kim
Fix a bug in pair_kim
2020-11-23 14:11:50 -05:00
1a2911c883 Merge pull request #2420 from rbberger/mpi_tests
Add MPI-enabled unit tests (C/C++ only)
2020-11-23 10:35:55 -05:00
b8d821e1f9 Merge pull request #2481 from lammps/energy_virial_constants
Introduce enums for energy and virial flags
2020-11-23 10:35:20 -05:00
3f31c69216 Update the vflag_atom based on the intended use in LAMMPS 2020-11-23 08:33:19 -06:00
e1835250c7 missing brace 2020-11-20 13:51:08 -07:00
cbde5619b0 leave placeholder for KSpace in compute centroid/stress/atom 2020-11-20 10:51:33 -07:00
2d69051cdf add documentation for sublo/subhi extracted flags. add corresponding entries to get data type. 2020-11-19 19:24:36 -05:00
371b1a80e3 add support for '-in none' for multi-partition runs from the library interface 2020-11-19 18:58:21 -05:00
7450d9547a add tests for accessing world/universe size and rank with different MPI settings 2020-11-19 13:52:26 -05:00
6acc69ddd2 reformat with clang-format 2020-11-19 13:51:32 -05:00
c7247aaaaf provide access to universe and world size and rank information. and number of OpenMP threads 2020-11-19 13:49:10 -05:00
949274a2a4 refactor handling of partition arguments so it does not modify the string passed 2020-11-19 13:48:28 -05:00
3d7fd453c3 allow extracting variables that are not atom or equal style compatible 2020-11-19 13:47:23 -05:00
9ea025295d need to define LAMMPS_LIB_MPI to make lammps_open() visible 2020-11-19 11:33:15 -05:00
96dece97ef Merge branch 'master' into mpi_tests 2020-11-19 11:22:58 -05:00
d1af1aa12d Merge pull request #2424 from jtclemm/restart_neigh_hist
Patching neighbor history restarts
2020-11-19 11:13:50 -05:00
96db39f08b Merge pull request #2450 from jrgissing/molecule-custom_id_order
molecule: use user-provided IDs in molecule files
2020-11-18 17:52:16 -05:00
6d0c8e71de Correct assignment of centroidstressflag 2020-11-18 17:51:04 -05:00
5691ec3dfd insure cvflag is zero, other tweaks 2020-11-18 15:05:11 -07:00
61ccccf908 Merge pull request #2462 from akohlmey/replicate-template-fixes
Preserve molecule templates when using "replicate"
2020-11-18 16:48:06 -05:00
c62c907281 doc string tweak 2020-11-18 13:02:07 -07:00
006fae0ee1 one more optimization 2020-11-18 12:52:59 -07:00
3ee6203e5a simplification to Pair::ev_setup() 2020-11-18 12:51:24 -07:00
8ca690acd3 missed one file 2020-11-18 12:22:06 -07:00
0876684780 energy/virial flags with CENTROID enum 2020-11-18 12:17:14 -07:00
7507773ead Merge pull request #2441 from stanmoore1/kk_fix_shake
Add Kokkos support for fix shake and forward comm on Device for fixes
2020-11-18 11:17:57 -05:00
1002383a45 Merge branch 'master' into replicate-template-fixes 2020-11-18 10:37:57 -05:00
64910d636c Merge pull request #2464 from iafoss/patch-1
bug fix in pair_mesont_tpm.cpp
2020-11-16 16:48:18 -05:00
35035189e6 Replace a few more 2s with VIRIAL_FDOTR 2020-11-16 16:36:06 -05:00
f6a1352be3 Update remaining lines 2020-11-16 16:23:30 -05:00
251dcdf8a2 Make use of ENERGY_ and VIRIAL_ constants 2020-11-16 15:33:15 -05:00