Commit Graph

43531 Commits

Author SHA1 Message Date
bb62f46404 Merge branch 'kmc' of https://github.com/jtavenner-dev/lammps into kmc 2025-05-09 14:27:05 -06:00
17da04f07b Cleaned up language errors 2025-05-09 14:25:08 -06:00
6436cc87b7 Corrected inconsistent voro-ID compute references and examples 2025-05-09 14:23:03 -06:00
5d9a7d154d address spelling and formatting issues 2025-04-15 22:48:25 -04:00
4bfdd3eb34 Remove trailing whitespace 2025-04-14 16:22:11 -06:00
51de62ce05 Reconcile version changes to documentation and polish 2025-04-14 15:58:19 -06:00
703750f4c8 Merge branch 'kmc' of https://github.com/jtavenner-dev/lammps into kmc 2025-04-14 15:57:16 -06:00
a3bc1a6c0b Merge branch 'lammps:develop' into kmc 2025-04-14 15:52:23 -06:00
ca246a50f1 Merge branch 'develop' of https://www.github.com/lammps/lammps into kmc 2025-04-14 15:37:47 -06:00
3a6ea0808d Merged changes to documentation for further user clarity 2025-04-14 15:36:33 -06:00
b081d289c1 Merge pull request #4546 from akohlmey/lammps-gui-enhancements
LAMMPS-GUI enhancements
2025-04-14 10:49:54 -04:00
0b0383bc64 Merge pull request #4548 from jrgissing/bond/react-create+rate_limit_bugfix
bond/react: refactor reaction counting
2025-04-14 09:38:10 -04:00
7be6e95647 Rephrasing suggested by @simongravelle 2025-04-14 06:28:29 -04:00
31df721767 update documentation 2025-04-13 20:01:06 -04:00
0bab80a26e not much use for editing x axis label. better give more space to other options 2025-04-13 19:33:07 -04:00
f181ca6aec support setting graph colors in preferences 2025-04-13 16:56:21 -04:00
1eb61936ab refactor reaction counting
previously, the rate_limit keyword did not work when also creating atoms
2025-04-13 12:56:01 -04:00
00673999af Merge remote-tracking branch 'github/develop' into lammps-gui-enhancements 2025-04-13 05:41:26 -04:00
994b7b4937 Merge pull request #4540 from evoyiatzis/fix-adapt-dihedral
extend fix adapt to treat dihedrals
2025-04-13 05:39:58 -04:00
bb09088731 add new tab to preferences for charts window settings 2025-04-12 11:49:41 -04:00
1ad2df84d8 add checkbox to automatically open tutorial website, if available 2025-04-12 06:49:44 -04:00
d0c3564216 update TODO list 2025-04-12 00:53:45 -04:00
2dd53c440e Add mini ToC for HowTo only and reorganize the introduction 2025-04-12 00:47:35 -04:00
ed1f4cc381 add functionality to edit the plot title and x- and y-axis labels 2025-04-11 23:25:56 -04:00
3aa3d45a9f Merge pull request #4532 from akohlmey/collected-small-fixes
Collected small fixes and changes
2025-04-11 21:02:02 -04:00
b8e14cd0c9 correct and rephrase one more time 2025-04-11 14:04:33 -04:00
3810be6c8b correct / clarify embedded docs 2025-04-11 14:04:27 -04:00
02c627db82 Merge branch 'collected-small-fixes' of github.com:akohlmey/lammps into collected-small-fixes 2025-04-11 12:34:45 -04:00
190ecd2666 clarify 2025-04-11 12:34:31 -04:00
a5b83224e4 rephrase to be less ambiguous and provide a couple more details 2025-04-11 12:29:03 -04:00
90797c7b62 document that also molecules from the molecule command can be visualized 2025-04-10 11:51:13 -04:00
83c785740b improve phrasing 2025-04-10 10:49:27 -04:00
dfc10e5b59 small improvements of molecule visualization. 2025-04-10 08:56:57 -04:00
bc031bdd7a initial attempt to allow viewing molecules. 2025-04-10 08:23:04 -04:00
f2bf0d0a8b add optional create_atoms group keyword to add new atoms to a custom group 2025-04-10 05:36:26 -04:00
980bf70310 improve error messages 2025-04-10 05:00:41 -04:00
227b4ed12d remove unused class members and plug memory leaks 2025-04-10 04:39:56 -04:00
32592e6660 add feature idea for LAMMPS-GUI 2025-04-10 01:13:44 -04:00
2f861b83d7 correct embedded documentation 2025-04-10 00:01:40 -04:00
d1f452fcb6 fix whitespace issues 2025-04-09 17:45:54 -04:00
6e7cbbeb9c add errorurl(36) message to all "boost neigh_modify one" errors 2025-04-09 17:35:42 -04:00
e9695df0e8 Provide some additional explanations for the "boost neigh_modify one" error 2025-04-09 17:29:34 -04:00
8fd1bf23c9 only compute special neighbors of a template if it has bonds 2025-04-09 16:41:46 -04:00
f16f65c8dc add missing entries 2025-04-09 10:45:51 -04:00
813e65026e fixing whitespaces 2025-04-08 15:53:45 +02:00
647bc7538d programming style fix 2025-04-07 21:46:09 -04:00
fc3d295560 add missing entry to OpenMP reduction clause. 2025-04-07 21:29:53 -04:00
dcb04032fb avoid memory leak on element names 2025-04-07 18:18:16 -04:00
99b484a0cc add Kokkos/OpenMP version of mliap unified test 2025-04-07 18:06:31 -04:00
c505bfbdfe make sure OpenMP has a sufficient number of threads allocated 2025-04-07 18:06:07 -04:00