Commit Graph

43124 Commits

Author SHA1 Message Date
bb788cb1a2 Merge remote-tracking branch 'github/develop' into file-formats 2025-03-25 17:36:55 -04:00
0b43649e74 Merge pull request #4513 from akohlmey/howto-bulk-to-slab
Add a Howto showing how to convert a bulk system to a slab
2025-03-25 16:54:38 -04:00
227b7840e7 add disclaimer and improve some formulations 2025-03-25 15:42:11 -04:00
2d0c1af656 Merge remote-tracking branch 'github/develop' into howto-bulk-to-slab 2025-03-25 15:40:55 -04:00
fecd93783b spelling 2025-03-25 15:40:40 -04:00
bafd2a8d6b Merge remote-tracking branch 'github/develop' into file-formats 2025-03-25 14:22:55 -04:00
9e241df062 Merge pull request #4182 from akohlmey/group-bitmap-accessor
Refactor code to use group bitmap accessor
2025-03-25 14:12:27 -04:00
5dbeacb1e8 Merge pull request #4508 from jewettaij/master
Fixed the Moltemplate HowTo docs
2025-03-25 13:02:31 -04:00
66d5fbd4bd Merge pull request #4516 from Eddy-Barraud/dpd_charged
wrong qi*qj in the cuda code
2025-03-25 11:28:21 -04:00
183486d813 implement suggestions from @ndtrung81 2025-03-25 11:27:19 -04:00
7fba02f865 fix logic bug when writing coeffs to data file 2025-03-25 03:02:17 -04:00
5a62d0a129 correct data in data file and pair_coeff changes are no longer needed
also re-create reference log files
2025-03-25 03:01:38 -04:00
d830412228 added boolean
the read_data is not reading slater boolean of pair_coeff
2025-03-24 16:04:40 +01:00
bbd057891a wrong qi*qj cuda code
correction of cutsq[mtype].z instead of extra[j].x !
2025-03-24 15:35:34 +01:00
adaa313990 Merge pull request #4502 from akohlmey/collected-small-fixes
Collected small changes and fixes
2025-03-23 15:59:38 -04:00
88cecbd11d alternate implementation of jump to top by @rbberger 2025-03-22 18:54:49 -04:00
cb5e45ff1f small tweaks 2025-03-22 11:24:53 -04:00
8a0900f0ab revert broken change to print angstrom character 2025-03-22 11:20:37 -04:00
9d0c25fbab improve wording 2025-03-22 11:15:26 -04:00
c289ad9471 forgot to include upward arrow image 2025-03-22 06:08:48 -04:00
725b34a70a add snapshot images to show the initial and final geometry and box 2025-03-22 06:08:16 -04:00
410d3e84b0 add a Howto demonstrating how to convert a bulk molecular system to a slab 2025-03-22 04:41:34 -04:00
3834169c92 first attempt to implement a "jump to top" anchor in the sidebar 2025-03-21 19:30:28 -04:00
ca575e395e fix spelling and duplicate references issues 2025-03-19 20:39:06 -04:00
37248a011e deleted trailing whitespace in the Howto_moltemplate.rst file (for PR #4508) 2025-03-19 15:30:06 -04:00
63b8e86a4b tried to minimize the differences between my version and the existing version 2025-03-19 13:58:46 -04:00
6700a3bed1 Fixed the Moltemplate HowTo docs. (I also added a very simple polymer example.) This needed to be done because the file names and @atom types in the old version of this HowTo are no longer accurate. OPLSAA has changed. Now this HowTo is compatible with the latest version of OPLSAA. More importantly, after this update, the HowTo documentation should never need to be updated again because OPLSAA force field files are named according to the OPLSAA version/date. For example, the "oplsaa.lt" file has been renamed to "oplsaa2024.lt". Future OPLSAA updates will go in other files with different names. So the @atom types in this HowTo example should never need to be updated in the future, regardless what happens with OPLSAA. 2025-03-19 13:36:09 -04:00
ee78e3e201 add -f option to install.py to install into externally-managed environments 2025-03-19 03:14:34 -04:00
4cd3fa1e38 spelling 2025-03-18 20:24:04 -04:00
90cd786c2d document how to address "externally managed environment" errors with install-python 2025-03-18 20:20:56 -04:00
d02e26d3ba document DOWNLOAD_POTENTIALS with CMake 2025-03-18 19:49:04 -04:00
69881baa0c add false positives 2025-03-17 23:33:47 -04:00
4aece11628 add note about need to run ldconfig on Linux system after make install 2025-03-17 23:33:39 -04:00
7d6c19f51b adjust for macos_arm64 arch 2025-03-17 18:12:33 -04:00
f0b988904d add some notes about releasing a stable release update 2025-03-17 17:59:32 -04:00
e502d40491 Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-03-17 17:40:29 -04:00
6f0a59372c Merge pull request #4500 from akohlmey/remove-smallsmall
Remove support for -DLAMMPS_SMALLSMALL
2025-03-17 17:16:54 -04:00
b329d01e5e small clarification 2025-03-17 12:25:06 -04:00
9e8b9e55be Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-03-17 11:01:42 -04:00
0a7b528d39 don't silence format errors 2025-03-17 11:01:16 -04:00
368e0a22a0 adding WHAM dialog is postponed 2025-03-16 19:21:08 -04:00
d65b0ce666 update to WHAM version 2.1.0 2025-03-16 17:28:57 -04:00
035aefcc26 address issues flagged by coverity scan 2025-03-15 21:38:18 -04:00
73585e1dcc revert broken change to print angstrom character 2025-03-15 21:17:00 -04:00
2240430d5e Merge pull request #4495 from lammps/use-pandoc-for-fasthtml
Use pandoc for make fasthtml
2025-03-15 15:55:00 -04:00
067f998eac Update Build_manual.rst 2025-03-15 10:57:28 -06:00
546ea917c7 fix a few more .rst formatting issues flagged by pandoc 2025-03-15 12:35:12 -04:00
b9218528cf CSS style tweaks to make pandoc output more similar to sphinx output 2025-03-15 12:34:48 -04:00
54be0adfb8 resolve some issues in .rst files detected by pandoc 2025-03-15 12:00:53 -04:00
5b5b700318 copy image files to fasthtml folder 2025-03-15 12:00:16 -04:00