Commit Graph

35458 Commits

Author SHA1 Message Date
bc4d664f2b Fully integrate cross-compiling Plumed2 lib into CMake build system 2023-04-10 07:23:46 -04:00
f84a31dfdf change folder for patches, so we can set PLUMED_ROOT accordigly 2023-04-09 01:46:58 -04:00
71700b8765 use explicit target to update/copy precompiled plumed files 2023-04-08 18:07:03 -04:00
891c284754 avoid static code analysis warnings 2023-04-08 16:38:39 -04:00
d71de7cc38 handle exceptions in destructors 2023-04-08 16:36:52 -04:00
d5680f0c6d fix typo 2023-04-08 15:44:56 -04:00
a6a8f2c451 more tweaks for cross-compiling plumed for windows 2023-04-08 15:28:18 -04:00
a98a77041e add option to include PLUMED into cross-compiled Windows binaries 2023-04-08 15:05:46 -04:00
4c403e5b71 close and finalize LAMMPS instance in MLIAP example python scripts 2023-04-06 12:58:30 -04:00
ebcb443237 correct link 2023-04-06 11:42:19 -04:00
e44aa77403 fix copy-n-paste error 2023-04-06 07:23:49 -04:00
4e48ddb975 No need to use nvcc_wrapper globally when configuring with CMake 2023-04-06 07:21:37 -04:00
e670a94b8a cosmetic 2023-04-04 08:09:47 -04:00
c9605e1cba update custom linker support also for "mold" (even faster than lld) 2023-04-04 06:06:26 -04:00
106f029941 improve Linux distribution detection for recent Fedora versions 2023-04-04 06:05:03 -04:00
e59c9d0f67 silence compiler warning 2023-04-03 21:49:53 -04:00
dfed9bf854 improve error messages 2023-04-03 21:49:43 -04:00
27127a46cc enable and apply clang-format 2023-04-03 21:41:09 -04:00
b53a47b192 Merge branch 'develop' into collected-small-changes 2023-04-03 21:32:32 -04:00
cbf7f66a6f Merge pull request #3717 from evoyiatzis/master
Block regions with bounds defined by equal-style variables
2023-04-03 21:31:17 -04:00
c9b6fad6a0 Merge pull request #3723 from stanmoore1/kk_shake_issue
Fix issue with Kokkos fix shake on GPUs from #3719
2023-04-03 17:45:32 -04:00
8e4e0e3749 whitespace 2023-04-03 10:23:15 -06:00
0bac0b4e0f Fix issue with Kokkos fix shake on GPUs from #3719 2023-04-03 10:11:04 -06:00
4e6dffc7cd silence compiler warning, reformat beginning of file. 2023-04-03 11:45:40 -04:00
d5418bd463 Merge pull request #3720 from akohlmey/collected-small-changes
Collected small changes and fixes
2023-04-03 11:13:22 -04:00
15fb6965c1 protect more loops for fixes and computes from segfaults 2023-04-02 22:15:08 -04:00
19683ade92 avoid segfault when returning list of fixes by style 2023-04-02 20:09:25 -04:00
09deafd6d4 modernize lookup of fixes 2023-04-02 17:46:42 -04:00
eb13217498 Merge branch 'patch-4' of github.com:evoyiatzis/lammps into collected-small-changes 2023-04-02 08:51:37 -04:00
5a2160c96e Update fix_indent.rst 2023-04-02 12:55:11 +03:00
590de515e3 Merge branch 'develop' into collected-small-changes 2023-04-01 18:18:56 -04:00
2056ef4aed Merge pull request #3718 from lammps/fix-gcmc-cleanup-group
Cleanup internally created group in fix gcmc
2023-04-01 18:11:41 -04:00
03d6d54435 remove obsoleted Domain::minimum_image_once() 2023-03-31 17:53:56 -04:00
81150b7392 Merge branch 'develop' into collected-small-changes 2023-03-31 17:50:07 -04:00
02babb16cd Merge pull request #3719 from stanmoore1/shake_closest
Refactor fix shake to use `closest_image` instead of `minimum_image_once`
2023-03-31 17:46:17 -04:00
c36ae07bd1 Temp solution for Kokkos min_post_force 2023-03-31 14:25:30 -06:00
06d67756d4 Fix issue with shake stats on GPU 2023-03-31 14:15:20 -06:00
909b20c00a Fix GPU issues 2023-03-31 13:01:25 -06:00
d9fcc4b968 Port Steve's changes to Kokkos 2023-03-31 11:45:33 -06:00
60b83a5732 use Domain::minimum_image() instead of Domain::minimum_image_once()
This way the latter function can be removed once the
fix shake/rattle refactor is complete
2023-03-31 13:43:16 -04:00
4aacbfb24f refactor to silence compiler warnings 2023-03-31 13:26:04 -04:00
5dd7ad4759 Merge branch 'shake_closest' of github.com:stanmoore1/lammps into shake_closest 2023-03-31 11:13:10 -06:00
ad9db3a127 code cleanup 2023-03-31 11:13:03 -06:00
d03fc75329 Fix issues in new Kokkos code 2023-03-31 11:02:11 -06:00
e5a82bc461 Merge pull request #3716 from lammps/remove-fix-latte
Remove fix latte and LATTE package and examples and lib
2023-03-31 12:52:47 -04:00
51beb97dd0 Fix compile error with BIGBIG 2023-03-31 10:23:30 -06:00
a6576046e0 Missed change 2023-03-31 10:18:24 -06:00
31bd8ce0c8 Port changes to Kokkos 2023-03-31 09:55:17 -06:00
b6ff9f0607 Remove other instances of minimum_image 2023-03-31 09:54:09 -06:00
11dbfab4cc Need xshake values on ghosts, even for 1 proc 2023-03-31 08:39:51 -06:00