Commit Graph

17514 Commits

Author SHA1 Message Date
77e323d28c prefix option in install.py not needed 2019-03-26 21:55:07 -04:00
1926c95625 correct micelle data file without overwriting the molecule ids 2019-03-26 19:08:58 -04:00
b6b0d0b30e minor whitespace cleanup commit to retrigger PR tests on github 2019-03-26 16:43:09 -04:00
dbd458e9e3 update micelle example with corrected data file and rigid body input 2019-03-26 16:35:35 -04:00
5a6a8a9e57 Merge pull request #1379 from lammps/hyper
Hyper-dynamics update
2019-03-26 16:30:37 -04:00
07a6749ddc install LAMMPS python module with either install-python or install target if prerequisites are given 2019-03-26 16:00:48 -04:00
3cabfd13cd Commit JT 032619
- finish merge of min_spin.cpp
- test output
2019-03-26 12:51:51 -06:00
26b90727b3 whitespace cleanup 2019-03-26 13:26:09 -04:00
cf349633f7 cosmetic changes 2019-03-26 13:09:49 -04:00
b8747ce8fb Merge branch 'clean-master2' of github.com:julient31/lammps into gneb_spin
Conflicts:
	doc/src/min_modify.txt
	doc/src/min_spin.txt
	examples/SPIN/spinmin/in.spinmin.bfo
	examples/SPIN/spinmin/in.spinmin.iron
	src/SPIN/fix_precession_spin.cpp
	src/SPIN/min_spin.cpp
	src/SPIN/min_spin.h
	src/SPIN/pair_spin_dmi.cpp
	src/SPIN/pair_spin_exchange.cpp
2019-03-26 10:59:21 -06:00
efad31f474 bug fixes to added rendezvous algorithms 2019-03-26 10:09:16 -06:00
e2e4fe2cf7 Merge pull request #1380 from julient31/minimizer_spin
Add a spin minimizer in the SPIN package
2019-03-26 11:52:21 -04:00
89bc79f657 Merge pull request #1382 from lammps/revert-1238-rendezvous
Revert "Rendezvous"
2019-03-26 11:51:27 -04:00
fff28a8666 remove trailing whitespace 2019-03-26 11:17:21 -04:00
1266b866e0 add some degree of endian detection to hashlittle.cpp 2019-03-26 11:01:39 -04:00
1ca0c78a2e turn off diagnostic output for rendezvous op 2019-03-26 11:01:39 -04:00
0bf6b91576 bug fix for new fix shake redezvous comm 2019-03-26 11:01:39 -04:00
62045a9c52 cleanup up rendezvous diagnostic output 2019-03-26 11:01:38 -04:00
bbe6c9bb63 added diagnostic info for memory and balance info 2019-03-26 11:01:38 -04:00
fc002e30d3 added rendezvous via all2all 2019-03-26 11:01:38 -04:00
981f12ebeb fix a small memory leak in SHAKE setup 2019-03-26 11:01:38 -04:00
b370a61b60 added rendezvous alg to fix shake 2019-03-26 11:01:38 -04:00
a3a16acead propagate rendezvous changes to fix rigid/small 2019-03-26 11:01:38 -04:00
17817fc290 less comm version of special bonds rendezvous 2019-03-26 11:01:38 -04:00
3f9d59294e replace STL map with atom->map in special, better code comments 2019-03-26 11:01:37 -04:00
9912c44413 rendevous comm option for special bonds and fix rigid/small 2019-03-26 11:01:33 -04:00
676370ade7 Commit JT 032619
- added citeme in neb/spin
- started work on distance output
2019-03-26 07:21:16 -06:00
8c99752cec Add fix elstop to USER-MISC
Implements inelastic energy loss for fast particles in solids.
2019-03-26 10:08:20 +02:00
d7a2949d1a Revert "Rendezvous" 2019-03-25 21:30:48 -04:00
6e7f13e6f9 Merge branch 'kim_query' of https://github.com/ellio167/lammps into final-changes-for-patch 2019-03-25 21:19:23 -04:00
4e74ccbbbe restore building developer pdf before manual pdf 2019-03-25 21:18:17 -04:00
b0a07f189c must use top-level dir to get the correct modified status 2019-03-25 21:18:17 -04:00
19d25203ad add min_style spin to commands overview 2019-03-25 21:05:13 -04:00
82d646cede print warning about missing fix nve/spin only on MPI rank 0 2019-03-25 20:59:22 -04:00
7b3f952990 whitespace cleanup and dead code removal 2019-03-25 20:50:39 -04:00
36b645d238 add min_spin page to toclist 2019-03-25 20:46:42 -04:00
b8c4e09b27 Put #ifdef around #include "curl/curl.h" in kim_query.cpp 2019-03-25 19:14:08 -05:00
81a4d293db Commit4 JT 032519
- corrected documentation (errors in min_spin.txt and
min_modify.txt)
- changed the code accordingly
2019-03-25 15:43:58 -06:00
cb92bccdff Merge pull request #1238 from lammps/rendezvous
Implement rendezvous protocol for more efficient communication setup for large number of MPI ranks
2019-03-25 17:20:00 -04:00
0edb82eb5e update format 2019-03-25 17:14:58 -04:00
b0a741fc58 add support for --prefix to python module installer 2019-03-25 16:51:35 -04:00
30be5e94d9 Commit3 JT 032519
- updated the README file
- updated examples/SPIN/spinmin/
2019-03-25 14:22:16 -06:00
7a00997a14 Commit2 JT 032519
- added equations for documentation
- updated examples (not calling fix nve/spin)
- replaced error message by warning in all pair/spin
2019-03-25 14:03:28 -06:00
a726362888 Commit JT 032519
- adding all min files into new branch
- preparing branch for pull request of spin minimizer
2019-03-25 12:57:42 -06:00
3e8c1c801b add some degree of endian detection to hashlittle.cpp 2019-03-25 14:03:29 -04:00
2f20581b29 Merge pull request #1374 from akohlmey/collected-small-fixes
Collected small changes for the next patch release
2019-03-25 13:15:45 -04:00
5d54e888d5 Merge pull request #1371 from akohlmey/add-kim-query
Add kim_query command to KIM package
2019-03-25 13:15:20 -04:00
1bd47f0318 Merge pull request #1365 from martok/meamc-evclear
Consolidate clearing of eflags and vflags
2019-03-25 13:14:59 -04:00
b055837f49 Merge pull request #1372 from julient31/minprec_spin
Add min_post_force in fix_precession_spin
2019-03-25 13:14:46 -04:00
34d1ed9b54 Merge pull request #1376 from junghans/cmake_gitversion
cmake: move lmpgitversion generation to build phase
2019-03-25 13:14:30 -04:00