Commit Graph

17514 Commits

Author SHA1 Message Date
eedc88eb9b MPI_Abort removed from reax/c/kk + fixed some declarations 2019-03-25 18:01:31 +01:00
88755aefca Added support for reax/c/omp 2019-03-25 17:44:52 +01:00
ab748ffe48 turn off diagnostic output for rendezvous op 2019-03-25 10:29:06 -06:00
a20d58312d add missing convesion to fractional coordinates and back for enforced PBC dumps of triclinic cells 2019-03-25 12:25:50 -04:00
e04ab51970 bug fix for new fix shake redezvous comm 2019-03-25 10:20:32 -06:00
5554deda39 fixed 2 spelling errors 2019-03-25 10:07:07 -06:00
de99dc8974 new output files 2019-03-25 09:54:28 -06:00
e9384b6b17 updating output files 2019-03-25 09:52:16 -06:00
a89a2de9d4 Removed unnecessary MPI_comm 2019-03-25 16:45:59 +01:00
b2a7205abe re-order ev_init() and ev_setup() so that 'init' comes before 'setup' as requested by @sjplimp 2019-03-25 11:31:23 -04:00
881cc71a44 Merge branch 'master' into hyper 2019-03-25 09:21:09 -06:00
83e458af0b Cleaning changes 2 2019-03-25 15:22:20 +01:00
99acb4ac54 Cleaning changes 1 2019-03-25 15:00:52 +01:00
f557b12e03 Merge branch 'clean-master2' of github.com:julient31/lammps into gneb_spin 2019-03-25 07:34:38 -06:00
111ff4475e Pointer moved to reax lists 2019-03-25 14:18:55 +01:00
414f9b25d1 cmake: move lmpgitversion generation to build phase 2019-03-23 08:01:41 -06:00
d5074b39a0 Merge pull request #57 from ellio167/add-kim-query
Update kim example query and log files
2019-03-22 21:42:06 -04:00
3464464ea9 Update kim example query and log files 2019-03-22 20:20:47 -05:00
22be3bd37e fix spelling error and add false positives for spellchecking 2019-03-22 17:33:16 -04:00
f69173f410 partial documentation update 2019-03-22 17:25:03 -04:00
52f9e4a960 allow overriding the location of the molfile plugin headers with CMake 2019-03-22 14:11:02 -04:00
c23ace9c97 Commit JT 032219
- fixed bug 1: precession_spin had no min_setup
- fixed bug 2: incorrect init of spins in neb/spin
- improved doc min_spin.txt (added eqs, and connected to related
files).
2019-03-22 11:52:09 -06:00
e50c269a6b add install-python target with suitable error message also when not building a shared library 2019-03-22 12:51:57 -04:00
04f999fdd6 add install-python target to CMake build system. decouple python module install from python package 2019-03-22 12:35:21 -04:00
817a851a30 adapt master makefile to refactored python module installer script 2019-03-22 12:01:59 -04:00
0f030acc59 refactoring python module installer script to be (more) platform neutral and compatible with conventional make and CMake builds 2019-03-22 11:59:15 -04:00
cd6b23d104 explicitly request OpenCL version 1.2 compatibility when compiling GPU package kernels for OpenCL 2019-03-22 09:50:31 -04:00
75d63df4e0 fix small memory leak in pair style hybrid when reading restarts 2019-03-22 05:41:32 -04:00
8916aeb36d update for README to USER-SMTBQ with up-to-date maintainer e-mails 2019-03-22 05:25:14 -04:00
b975d59d9f make use of copymode flag in pair style destructors consistent 2019-03-22 05:15:02 -04:00
8f90d6c6d0 must bracket 'memory->destroy()' calls in destructor with 'if (allocated)' 2019-03-22 04:55:13 -04:00
1e8ccb1774 initialize setflag and cutsq pointers to NULL, so they are not accessed uninitialized by accident 2019-03-22 04:54:06 -04:00
f2ef02b6d9 Comm exchange is a no-op for 1 MPI rank 2019-03-21 09:27:18 -06:00
c3adfcbc15 Add missing sync in comm_kokkos 2019-03-21 08:56:12 -06:00
76b9c0049d Merge pull request #1359 from martok/dynamical-matrix
Updates and bugfixes to the dynamical_matrix command
2019-03-20 21:34:34 -04:00
744a8215dd Fix compile error in comm_kokkos and indent in atom_vec_kokkos 2019-03-20 15:08:08 -06:00
1f44dc2498 Remove unused array in comm_kokkos 2019-03-20 15:01:47 -06:00
d1e751d717 Fix thread safety issue in fused forward comm 2019-03-20 14:32:03 -06:00
2cbf56846a Commit JT 032019
- moved gneb files from src/REPLICA to src/SPIN
- changed name of min/spin
- implemented read_param in min.cpp and min_spin.cpp
- set sp_flag tests in min_spin.cpp and neb_spin.cpp
2019-03-20 10:41:36 -06:00
86810c2d7c Commit2 JT 031919
- correct error in fix_precession_spin
- only the sign of the force needed a correction
2019-03-19 22:44:26 -06:00
a508f1de6c Commit JT 031919
- correct. error in fix_prec_spin
- added min_post_force in fix_prec_spin
2019-03-19 22:30:44 -06:00
08273c40d7 Fix compile issue in comm_kokkos 2019-03-19 14:29:45 -06:00
2dbc2c5916 fix spelling issues in documentation and some minor clarification 2019-03-19 16:04:53 -04:00
1c3e3ce548 add kim_query command to commands list 2019-03-19 15:57:19 -04:00
fed48427be update lib/kim/Install.py to support md5 checksum. update CMake support as needed 2019-03-19 15:48:03 -04:00
38c373a0e4 integrate new kim_query command into the documentation environment 2019-03-19 15:42:35 -04:00
741a7fe630 final touches to support compiling with libcurl transparently 2019-03-19 15:40:49 -04:00
7a8bb5baaf come code cleanup and refactoring 2019-03-19 15:33:53 -04:00
02b800a3bb add template for new kim_query command 2019-03-19 15:33:48 -04:00
a626efbca0 Merge pull request #1370 from akohlmey/write-data-for-dihedrals-fixes
Enable write_data for more dihedral styles and related corrections
2019-03-19 13:55:15 -04:00