Commit Graph

17514 Commits

Author SHA1 Message Date
12f8834b80 correction of the incomplete implementation warning in write_coeff 2019-05-07 19:26:57 -04:00
6c3cae8823 remove unused vars 2019-05-07 15:37:45 -05:00
1d1611ce44 init del3 to silence valgrind errors 2019-05-07 15:35:37 -05:00
a87d8e124f Merge pull request #1449 from akohlmey/fix-print-w-variable-step
Support using a variable instead of a constant interval for fix print
2019-05-06 12:10:42 -04:00
cc30688137 Merge pull request #1364 from stanmoore1/kk_binsize
Change defaults for KOKKOS package
2019-05-06 12:10:08 -04:00
b3f4e2055e Merge pull request #1438 from giacomofiorin/colvars-update
Update Colvars library to version 2019-04-26
2019-05-06 12:08:50 -04:00
8212dca609 Merge pull request #1447 from ohenrich/user-cgdna
Homogenised label of relative hbond and stk strength to conform with oxDNA literature
2019-05-06 12:07:41 -04:00
319ed5dd48 Merge pull request #2 from akohlmey/pair_drip
Silence warnings about unused variables and parameters, minor tweaks
2019-05-05 09:29:00 -05:00
bac8b267df make sure fix deform related variables are always initialized to avoid issues with the DomainOMP class. 2019-05-05 10:26:27 -04:00
da6e576ffd silence warnings about unused variables and parameters, minor tweaks 2019-05-05 10:17:45 -04:00
f163d7dc9b typo fix 2019-05-05 08:56:15 -05:00
a354b52e3c Merge pull request #1 from akohlmey/pair_drip
Pair drip updates required for merging into LAMMPS upstream
2019-05-05 08:41:51 -05:00
0a4b0cf019 add pair style drip to .gitignore 2019-05-05 09:20:10 -04:00
4d4219ca3e integrate drip pair style more closely into manual 2019-05-05 08:59:03 -04:00
d86a7b95de fix spelling issues 2019-05-05 08:48:27 -04:00
db54b03751 Force line length to 80 2019-05-04 22:55:22 -05:00
24e41bc085 Update doc and examples due to the change of parameters 2019-05-04 22:24:05 -05:00
c28cf9f742 set variant flag in USER-INTEL (AI)REBO(-M) styles 2019-05-04 20:53:43 -04:00
fd3eade6d2 update reference date and examples for changes in REBO 2019-05-04 20:42:36 -04:00
1214e6ea79 align USER-INTEL versions of REBO/AIREBO with MANYBODY implementation 2019-05-04 20:08:34 -04:00
c2b2be5d6f Merge branch 'master' into github-rebo-bugfix 2019-05-04 19:09:52 -04:00
81d3fa77bb Add missing molecule_flag=1 in atom_vec_bond_kokkos 2019-05-04 17:42:21 -04:00
a7226bd93d remove unused variables 2019-05-04 15:12:31 -04:00
66f7f2a5ef pass more cmake settings to LATTE downloaded library build 2019-05-04 15:11:53 -04:00
a70f9c4f95 support using a variable instead of a constant interval for fix print 2019-05-04 13:47:57 -04:00
3baf15ed6f apply bugfix from PR #1446 to allow switching from variable thermo output back to evenly spaced 2019-05-04 11:35:18 -04:00
d7dd78126c Homogenised label of relative hbond and stk strength to conform with oxDNA literature 2019-05-02 16:48:41 +01:00
97ce76e759 Merge pull request #1444 from akohlmey/fix-intel-lrt-bug
CMake update for verlet/lrt/intel
2019-05-01 16:19:37 -04:00
d7da1db745 teach CMake that verlet/lrt/intel depends on KSPACE 2019-05-01 08:20:24 -04:00
4f3c87f8c4 Merge pull request #1423 from akohlmey/next-patch-release
Step version string for next patch release
patch_30Apr2019
2019-04-30 19:52:35 -04:00
02d5f17a18 Merge pull request #1437 from lammps/gpu_cmake_bugfix
Fix GenerateOpenCLHeader CMake utilitiy to avoid uncompilable CL code
2019-04-30 19:05:59 -04:00
7e00acce53 Update Colvars library to version 2019-04-26
The following is list of relevant issues fixed and improvements:

Fix forces and missing output of runtime histogram for histogramRestraint
https://github.com/Colvars/colvars/pull/246

Use fix_modify to add configuration to Colvars:
https://github.com/Colvars/colvars/pull/216

Fix componentCoeff and name not working with orientationAngle components:
https://github.com/Colvars/colvars/issues/213

Fix 1-timestep offset with extendedLagrangian:
https://github.com/Colvars/colvars/pull/210

Changes to improve compiler support:
https://github.com/Colvars/colvars/pull/203

Fix ignored anisotropic cutoff3 for groupCoordNum:
https://github.com/Colvars/colvars/pull/202

New dipoleMagnitude variable:
https://github.com/Colvars/colvars/pull/198

Parser improvements:
https://github.com/Colvars/colvars/pull/196
2019-04-30 13:46:37 -04:00
7fbd409f5b Fix GenerateOpenCLHeader CMake utilitiy to avoid uncompilable CL code 2019-04-30 12:59:27 -04:00
faa0da9976 Merge pull request #1434 from ellio167/reaxc-multi-instance-fix
Reaxc multi instance fix
2019-04-30 12:03:43 -04:00
e08080cae5 Merge pull request #1436 from rbberger/gpu_opencl_bugfixes
GPU package bugfixes
2019-04-30 12:02:52 -04:00
7b7f405d2c Merge remote-tracking branch 'origin/master' into gpu_opencl_bugfixes 2019-04-30 01:39:19 -04:00
66d94572e0 Add missing includes to OpenCL CMake builds of re_squared and tersoff kernels 2019-04-30 01:37:27 -04:00
8145c5028d Fix OpenCL compilation errors due to bad comments in macros 2019-04-30 00:44:12 -04:00
0005ee3e93 Merge pull request #1435 from akohlmey/collected-small-changes
Collected small changes for next patch release
2019-04-29 20:19:50 -04:00
8d9697dbf6 Merge pull request #1420 from dsbolin/gran_mods
Updates and bugfixes to GRANULAR package
2019-04-29 14:16:25 -04:00
f052509015 Merge pull request #1421 from julient31/gneb_spin
Adding a GNEB implementation in the SPIN package
2019-04-29 14:14:58 -04:00
97baee4931 Commit2 JT 042919
- modified energy/torque tolerance for faster convergence in
examples/SPIN/gneb/skyrmion/in.gneb.skyrmion
2019-04-29 08:23:57 -06:00
96e51d11ad equilibrium angle must be converted to radians in angle style table 2019-04-29 10:09:33 -04:00
0bb2e004ab Commit JT 042919
- corrections Axel 1
2019-04-29 08:08:56 -06:00
98daf8f825 optimize granular examples and include logs 2019-04-29 09:48:57 -04:00
af8a71b1ad while space and source formatting cleanup 2019-04-29 09:17:29 -04:00
0fac0e18d1 no need for libm or GSL to compile the interpolate code 2019-04-27 17:50:12 -04:00
8102fdcf24 make sure r3inv is initialized when lj and coul cutoff are different 2019-04-27 14:51:37 -04:00
5d9e85d840 make sure r6inv is initialized and not computed multiple times 2019-04-27 14:43:13 -04:00
d190b76075 remove unused custom constructor 2019-04-27 13:22:14 -04:00