Commit Graph

16302 Commits

Author SHA1 Message Date
cea0855fe4 small programming style cleanup 2019-01-14 17:47:58 -05:00
d01c28002f update plumed support to use newer version of the library 2019-01-14 17:47:36 -05:00
54679b69f4 add argparse support to Install.py for kim library 2019-01-14 17:40:18 -05:00
dc5385b290 add argparse support to Install.py in message lib 2019-01-14 17:13:46 -05:00
659bec582e update Install.py for LATTE to use the argparse module 2019-01-14 16:54:44 -05:00
2604b60eb8 properly apply version flag 2019-01-14 16:29:07 -05:00
718428df68 add md5 sum check for Voro++ download via Install.py 2019-01-14 15:03:29 -05:00
4eb141391b add md5 sum check for Eigen3 download via Install.py 2019-01-14 15:03:07 -05:00
23ad82a074 add md5sum check for ScaFaCoS download via Install.py 2019-01-14 15:02:38 -05:00
b20be581c1 update Eigen3 download to version 3.3.7 for CMake as well 2019-01-14 15:02:09 -05:00
ef25afcedb update Install.py for ScaFaCoS to use argparse 2019-01-14 14:44:32 -05:00
e4cf409d69 update default Eigen3 version to the latest release 2019-01-14 14:13:53 -05:00
c3a15e221d use sys.exit() instead of the removed error() function 2019-01-14 14:13:40 -05:00
59559f74e6 make smd/Eigen library Install.py script use argparse module 2019-01-14 13:55:22 -05:00
1e1f754d0c make gpu library Install.py use argparse module 2019-01-14 12:52:21 -05:00
8d4bfa1aa7 port plumed and mscg Install.py files to use argparse 2019-01-14 12:52:21 -05:00
3aacea671e use argparse in colvars lib build 2019-01-14 12:52:21 -05:00
4e7329151d update generic Install.py script to use argparse 2019-01-14 12:52:21 -05:00
aad8dd1462 use argparse for more consistent and robust argument parsing.
this uses the code in PR #1244 as template. it supersedes the PR and thus closes #1244
2019-01-14 12:52:21 -05:00
a5ce656c32 Merge pull request #1288 from jrgissing/bond/react-limit-total-number-of-reactions
Bond/react: limit number of reactions, bugfixes
2019-01-13 10:26:06 -05:00
b0af54ac37 bond/react:limit reaction occurrences 2019-01-13 00:07:03 -07:00
4ec21e1b31 Merge pull request #40 from lammps/master
rebase
2019-01-12 23:28:09 -07:00
3cbf009ce6 Merge pull request #1286 from jrgissing/bond_react-memory_correction
Bond/react: memory correction
2019-01-10 07:09:45 -05:00
8387b2953b bond_react:correctly delete internally-created fixes 2019-01-09 23:14:24 -07:00
e82999ecb4 Merge pull request #39 from lammps/master
rebase
2019-01-09 22:17:33 -07:00
61c36dd768 Merge pull request #1277 from stanmoore1/kk_reax_bugfix
Fix memory issue in Kokkos Reax
2019-01-07 14:36:22 -05:00
7fe7dd95d0 Fix memory issue in pair_reaxc_kokkos 2019-01-07 12:09:36 -07:00
06f9933c55 Merge pull request #1276 from akohlmey/rename-lebedva-sources
Rename pair style lebedeva/z sources
2019-01-07 11:32:54 -05:00
98e0d6eab2 rename sources for pair style lebedeva to be consistent with style name 2019-01-06 21:42:08 -05:00
5ec9623294 Merge pull request #1274 from lammps/rerun-doc
add parallel dump file info to rerun doc page
2019-01-06 21:36:56 -05:00
43edcf4c02 Merge pull request #1275 from jrgissing/bond/react-check-template-topology-overflow
Bond/react: check for molecule template topology overflow
2019-01-06 21:36:13 -05:00
9ae84bc367 bond/react: check template for topology overflow 2019-01-06 17:07:35 -07:00
ca6c1c4b41 Merge pull request #38 from lammps/master
rebase
2019-01-06 16:58:33 -07:00
0cc9a445e8 add parallel dump file info to rerun doc page 2019-01-04 17:09:11 -07:00
c26b2078ee Merge pull request #1271 from akohlmey/next-patch-release
Patch release 4 January 2019
patch_4Jan2019
2019-01-03 22:28:55 -05:00
856c325ac4 Merge pull request #1273 from akohlmey/rename-lebedeva
Rename pair style lebedeva to lebedeva/z
2019-01-03 19:43:08 -05:00
7323179de3 rename pair style lebedeva to lebedeva/z to be consistent with kolmolgorov/crespi/z 2019-01-03 17:30:16 -05:00
19e12aada5 Patch release 4 January 2019 2019-01-03 13:44:18 -05:00
abcba913ab Merge pull request #1242 from akohlmey/collected-post-stable-patches
Collected post stable patches
2019-01-03 13:20:28 -05:00
fd18660463 Merge branch 'collected-small-changes' into collected-post-stable-patches 2018-12-29 17:08:32 -05:00
1991ff6c48 consistent formatting: replace "if( XXX)" with "if (XXX)" 2018-12-29 17:08:12 -05:00
f25bfd5931 consistent formatting: replace "if( XXX )" with "if (XXX)" 2018-12-29 17:04:28 -05:00
6e866f82a7 correct typo (missing increment operator) in fix bond/react 2018-12-29 16:31:44 -05:00
01163c9ae8 correct error in Purge.list for removed files of the REAX package 2018-12-29 16:30:38 -05:00
e7361728a1 Merge branch 'collected-small-changes' into collected-post-stable-patches 2018-12-29 14:51:31 -05:00
37a597cc0f Merge branch 'master' into collected-post-stable-patches 2018-12-29 14:51:21 -05:00
2e70541134 consistent formatting: replace '}else' with '} else' 2018-12-29 14:50:26 -05:00
991ca25dd7 consistent formatting: adjust cases of "dangling else", add curly braces 2018-12-29 14:47:50 -05:00
444dcca433 Merge pull request #1254 from akohlmey/remove-reax-meam
Remove REAX and MEAM packages
2018-12-29 13:06:07 -05:00
25a4fd4793 Merge pull request #1262 from evoyiatzis/evoyiatzis-patch-1
Addition of extract() method for class2 pair potentials
2018-12-29 13:05:38 -05:00