Commit Graph

26127 Commits

Author SHA1 Message Date
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
49a7bb57de add clang-format support to plugin examples 2021-05-05 23:51:12 -04:00
5fcd0d8b79 apply clang-format 2021-05-05 23:48:43 -04:00
9e4c618d30 add clang-format support for fastdep tool 2021-05-05 23:46:26 -04:00
97cd87a198 include clang-format configuration file 2021-05-05 22:20:54 -04:00
b19a4aeb22 fix up include files in USER-PTM package 2021-04-30 15:51:50 -04:00
ad8dc606e9 protect style macros in headers 2021-04-30 15:14:41 -04:00
a1665fddc8 next iteration of preparing for clang-format 2021-04-30 13:51:14 -04:00
04ee87af0c Merge branch 'master' into prepare-clang-format 2021-04-30 13:29:45 -04:00
6f5881e151 Merge pull request #2710 from msvbd/dpd_extended
Generalized DPD pair styles: dpd/ext and dpd/ext/tstat
2021-04-30 13:26:16 -04:00
8d8158396f Merge pull request #2721 from agiliopadua/examples
New examples for FEP calculation and references in doc pages
2021-04-30 12:55:57 -04:00
85ba1e9e3b Fix documentation build by adding explicit dependency to six 2021-04-30 12:27:21 -04:00
b7fb28f940 Merge pull request #2719 from akohlmey/varargs-log-error-functions
Overload utils::logmesg(), Error::all(), and Error::one() so they can take a format string and a variable number of arguments
2021-04-30 12:12:13 -04:00
0ec6cec117 Merge pull request #2743 from jrgissing/bond/react-create_atoms_bugfix
bond/react: create atoms bugfix
2021-04-30 11:40:37 -04:00
4384cf57a4 relocate comment 2021-04-29 17:34:04 -04:00
1d51abd160 bond/react: create atoms bufix
fix when multiple insertions straddling box boundary
2021-04-29 16:42:34 -04:00
00578e1b26 Merge pull request #2741 from stanmoore1/kk_mycutneighsq
Add missing code in Kokkos neighborlist to use custom cutoff
2021-04-28 19:21:07 -04:00
a9ff9312d6 Merge remote-tracking branch 'origin/master' into varargs-log-error-functions 2021-04-28 18:13:31 -04:00
9a7e32a924 Add missing code in Kokkos neighborlist to use custom cutoff 2021-04-28 13:54:23 -06:00
ceb173135b Merge pull request #2737 from ab5424/patch
Update USER-INTEL.cmake
2021-04-27 22:32:30 -04:00
980244dd0c add protection comments 2021-04-27 22:31:01 -04:00
d3b19f22fc Merge pull request #2738 from akohlmey/read_data_trunc_lines
Make read_data compatible with files that have lines longer than 256 chars
2021-04-27 21:11:09 -04:00
5d837a0641 update unit tests 2021-04-27 18:46:30 -04:00
d315105dfa document line length limit in atomfile variable names 2021-04-27 18:43:23 -04:00
632e963092 add comment to line length truncation limit in data files 2021-04-27 18:39:43 -04:00
7b1b57aa9b rename utils::fgets_trunc_nl() to utils::fgets_trunc() 2021-04-27 18:32:51 -04:00
1aec90473c Merge pull request #2739 from stanmoore1/kk_mvapich
Fix typo in MVAPICH flag for Kokkos CUDA-Aware MPI
2021-04-27 18:29:58 -04:00
cc4f25e77c Fix typo in MVAPICH flag for Kokkos CUDA-Aware MPI 2021-04-27 13:44:27 -07:00
f29744b5bc add documentation for fgets_trunc_nl() 2021-04-27 16:21:17 -04:00
15cff295c0 change read_data to use new utility function 2021-04-27 16:14:08 -04:00
e2318e1710 add tests for new function 2021-04-27 16:13:57 -04:00
b65bc86718 new utility function fgets_trunc_nl() 2021-04-27 16:13:45 -04:00
cce54b6ba5 disable check failing due to inconsistent behavior on different platforms 2021-04-27 16:13:23 -04:00
5655523468 correct expected error message 2021-04-27 16:13:15 -04:00
6375b91bd7 Update USER-INTEL.cmake 2021-04-27 17:13:03 +02:00
3455172f7d Merge pull request #2725 from akohlmey/more-unit-tests
Add more unit tests
2021-04-26 23:30:44 -04:00
57a7bd7186 adjust for changed CMake variable scope due to moving script code 2021-04-26 20:16:55 -04:00
18215ff3e7 Merge remote-tracking branch 'origin/master' into more-unit-tests 2021-04-26 14:48:14 -04:00
462f27d661 Use copy-and-swap in Tokenizers
Ensures that the classes behave consistently when copied, moved, copy assigned,
and move assigned.
2021-04-26 14:28:13 -04:00
39f3c1684f Merge pull request #2729 from akohlmey/update-contributing-guide
Update the GitHub contributing guide to include the MatSci forum
2021-04-26 14:23:30 -04:00
6b04ebd617 Merge branch 'master' into varargs-log-error-functions 2021-04-26 13:27:58 -04:00
31d244dd80 Merge pull request #2727 from akohlmey/refactor-read-lines-from-file
Move "read_lines_from_file" utility function from Comm class to utils namespace
2021-04-26 13:24:24 -04:00
4a2816b61c Merge pull request #2726 from akohlmey/iwyu-update
Update lists of included header files
2021-04-26 12:28:49 -04:00
0eee2d013d add info to docs 2021-04-26 12:27:34 -04:00
2c6fe2d0b5 add tests for the overloaded constructor using a file pointer 2021-04-26 12:12:45 -04:00
dbd7d454b9 for consistent behavior we must not close the file pointer when it was passed as argument 2021-04-26 12:12:19 -04:00
8af1530e29 throw EOF exception in TextFileReader::next_values() if next_line() doesn't do it 2021-04-26 11:27:17 -04:00
ac60cfb0c3 add custom constructor for TextFileReader that uses an already opened file descriptor 2021-04-26 11:26:50 -04:00
4fa5840f13 fix bug due to adding ArgInfo 2021-04-26 11:02:41 -04:00
792966a957 always describe the git version, even when using a git clone without history 2021-04-26 11:02:15 -04:00