Commit Graph

20658 Commits

Author SHA1 Message Date
d4c06a2e2a Merge pull request #2027 from junghans/cmake_clean_up_plumed
USER-PLUMED: remove unused defines
2020-04-27 16:12:58 -04:00
f9b873db24 Merge pull request #2032 from akohlmey/change-box-image-flags
Reset image flag(s) when changing from periodic to non-periodic
2020-04-27 14:58:36 -04:00
73ec2d8182 fix typo in MPI_Allreduce call. 2020-04-27 11:06:17 -04:00
b04cc115f3 document the image flag reset for switching boundaries 2020-04-27 10:51:53 -04:00
644f74c585 when changing boundaries from periodic to non-periodic, we need to reset the image flags for these dimensions to 0 2020-04-27 10:39:34 -04:00
7fd50045fe USER-PLUMED: remove unused defines 2020-04-25 10:16:58 -06:00
72ff0dd87d Merge pull request #2004 from stanmoore1/kk_3.1
Update Kokkos library in LAMMPS to v3.1
2020-04-24 18:35:53 -04:00
5cbebddae6 Merge pull request #2006 from ndtrung81/body-doc-fix
Fixed the doc page for fix wall/body/polyhedron
2020-04-24 18:01:50 -04:00
3f8efed1fd Merge pull request #2010 from akohlmey/collected-small-fixes
Collected bug fixes and small updates
2020-04-24 17:44:49 -04:00
5855d334e6 Merge pull request #2014 from ellio167/kim_charge
Added changes to support SMs setting charges in kim_interactions
2020-04-24 17:13:58 -04:00
4dae4578ad Merge pull request #2018 from junghans/cmake_kim-api_find
cmake: move kim-api detection to cmake config
2020-04-24 16:55:48 -04:00
4890c328d9 add comment to trigger jenkins rerun 2020-04-24 13:21:38 -04:00
08dc8e860e Merge pull request #2022 from junghans/github-template-comments
github templates: turn comments in real comments
2020-04-24 13:18:40 -04:00
e114a8d15b Revert accidental change 2020-04-24 10:14:31 -06:00
cb2a9e4329 Clear sharedsize for flat method 2020-04-24 10:10:22 -06:00
47b06cf541 github templates: turn comments in real comments 2020-04-24 09:51:13 -06:00
68dd6d0f19 cmake: move kim-api detection to cmake config 2020-04-23 09:20:38 -06:00
fc10e885b2 make description of eflux as a variable less convoluted 2020-04-22 08:13:27 -04:00
73bf1874c5 update code owner entry for fix bond/react 2020-04-22 08:12:56 -04:00
48ab70f9ee avoid segfault when using compute_scalar() on the initial step and no scaling has yet been done. 2020-04-22 07:30:06 -04:00
5eccaecf9b use #include <cstdint> now that we require C++11 2020-04-21 19:31:57 -04:00
db4c6e4056 update include file conventions since we no longer require C++98 for LAMMPS core files 2020-04-21 19:31:18 -04:00
0f9d8efe69 state in external Kokkos error message the version 3.1 or later is required 2020-04-21 12:50:27 -04:00
ea31fc11a6 add more explicit note about lack of support for pair styles in compute centroid/stress/atom 2020-04-21 12:44:13 -04:00
9f923c51f8 update singularity definition files for ubuntu variants to enable more LAMMPS build options and features 2020-04-21 12:07:34 -04:00
3c144600a5 update Kokkos related documentation for Kokkos 3.1 and refactor build info a bit 2020-04-21 11:46:16 -04:00
2348d6db62 use HOSTARCH/HOST instead of CPUARCH/CPU to better distinguish from GPUARCH/GPU 2020-04-21 08:30:16 -04:00
729646d7b5 update table of Kokkos supported archs and indicate HOST/GPU designation 2020-04-21 08:27:00 -04:00
2ac7bfc9cf rephrase note about kernel JIT recompilation and Kepler vs. the rest compatibility 2020-04-21 08:26:01 -04:00
0711232e5b Merge pull request #2000 from akohlmey/polymorphic-update
Update for pair style polymorphic from Xiaowang Zhou
2020-04-20 17:14:47 -04:00
0dfb1329be we must not write out per-type pair cutoff when long-range LJ is enabled 2020-04-20 16:56:09 -04:00
1c15ba88f3 need to copy maxspecial and "extra" data to do a proper recreation 2020-04-20 15:27:30 -04:00
91153eaa1a Added changes to support SMs setting charges in kim_interactions 2020-04-20 13:15:25 -05:00
dcc074215d fix inconsistent memory allocate/free 2020-04-20 06:04:33 -04:00
42203bbc35 fix two more typos 2020-04-19 16:37:52 -04:00
a7391d1e36 small corrections/updates for the polymorphic pair style docs 2020-04-18 10:14:38 -04:00
1599d98425 Fixed the doc page for fix wall/body/polyhedron 2020-04-17 13:33:47 -05:00
d3498591f3 Merge branch 'master' of github.com:lammps/lammps into kk_3.1 2020-04-17 12:01:32 -06:00
822c396e3a Work around Kokkos issue 2020-04-17 11:30:43 -06:00
ba66f05a04 some reformatting and minor cleanup of the documentation 2020-04-16 19:14:42 -04:00
42a59921f9 fix spelling issues 2020-04-16 19:04:26 -04:00
21e9db6bdf Merge branch 'master' into polymorphic-update 2020-04-16 18:18:41 -04:00
4fa0186b68 update docs to cleanly translate 2020-04-16 18:17:38 -04:00
0766350838 Merge pull request #2003 from stanmoore1/dpd_error
Remove unnecessary error check in USER-DPD fix rx
2020-04-16 16:49:29 -04:00
8c54507371 forward Kokkos library variables from CMake configuration for LAMMPS to the downloaded Kokkos library build 2020-04-16 16:46:27 -04:00
850bee2331 update KOKKOS.cmake for Kokkos 3.1. no more patch needed. 2020-04-16 15:39:53 -04:00
b3c7c1f93c utils.h is not used anymore 2020-04-16 15:13:21 -04:00
348118317c Update Kokkos docs 2020-04-16 12:36:43 -06:00
f8f69996eb Remove obsolete note 2020-04-16 11:49:03 -06:00
19ac94e9a3 remove @timmattox as a code owner of USER-DPD 2020-04-16 13:15:41 -04:00