Commit Graph

9534 Commits

Author SHA1 Message Date
c01fb5f701 new loop structure in pair ATM 2018-08-24 14:33:06 -06:00
796b6b2d9c Merge branch 'master' into kim-v2-update 2018-08-24 14:28:33 -05:00
d8b087aeb4 docs for MD protocol enhancements 2018-08-24 11:11:34 -06:00
735ec9de0b more general MD c/s protocol 2018-08-24 10:53:05 -06:00
92a4dc25b1 Fix unused params in packages (#1076) 2018-08-24 10:42:08 -06:00
19976bb94f Fixup conditionally used params (#1076) 2018-08-24 10:42:08 -06:00
7a2cb10864 Remove unused variable (#1076) 2018-08-24 10:42:08 -06:00
fd6792c6be Fix unused params in GRANULAR (#1076) 2018-08-24 10:42:08 -06:00
1abeec3a43 Fix initialization order (#1076) 2018-08-24 10:42:08 -06:00
33d5fe457c re-merge with current master 2018-08-24 09:57:08 -06:00
44bda245a6 resolution of cutoff issues 2018-08-24 09:36:39 -06:00
e9bc939098 Fix more unused parameter warnings (#1076) 2018-08-23 12:22:44 -06:00
7238d4af94 Fix logic warnings (#1076) 2018-08-23 10:08:36 -06:00
2eeb8cecb2 removed left-over debug messages 2018-08-23 10:08:31 -06:00
dd923edf15 Fix unused parameters in memory.h (#1076) 2018-08-23 09:20:02 -06:00
59d3af44f2 use c++ style system headers 2018-08-23 10:27:51 -04:00
929185da07 Merge branch 'master' into axilrod-teller
# Conflicts:
#	cmake/CMakeLists.txt
#	doc/src/Commands.txt
#	doc/src/Commands_bond.txt
#	doc/src/Howto.txt
#	doc/src/Howto_bioFF.txt
#	doc/src/Howto_coreshell.txt
#	doc/src/Howto_couple.txt
#	doc/src/Howto_diffusion.txt
#	doc/src/Howto_dispersion.txt
#	doc/src/Howto_granular.txt
#	doc/src/Howto_library.txt
#	doc/src/Howto_multiple.txt
#	doc/src/Howto_replica.txt
#	doc/src/Howto_restart.txt
#	doc/src/Howto_temperature.txt
#	doc/src/Howto_tip4p.txt
#	doc/src/Intro.txt
#	doc/src/Intro_authors.txt
#	doc/src/Intro_features.txt
#	doc/src/Intro_nonfeatures.txt
#	doc/src/Manual.txt
#	doc/src/Manual_version.txt
#	doc/src/Packages.txt
#	doc/src/Packages_details.txt
#	doc/src/Packages_standard.txt
#	doc/src/Packages_user.txt
#	doc/src/Section_start.txt
#	doc/src/Speed.txt
#	doc/src/Speed_compare.txt
#	doc/src/Speed_gpu.txt
#	doc/src/Speed_intel.txt
#	doc/src/Speed_kokkos.txt
#	doc/src/Speed_measure.txt
#	doc/src/Speed_omp.txt
#	doc/src/Speed_opt.txt
#	doc/src/Speed_packages.txt
#	doc/src/Speed_tips.txt
#	doc/src/fix_deform.txt
#	doc/src/fix_external.txt
#	doc/src/fix_property_atom.txt
#	doc/src/lammps.book
#	doc/src/neb.txt
#	doc/src/pair_eam.txt
#	doc/src/prd.txt
#	doc/src/run_style.txt
#	doc/src/temper.txt
#	src/version.h
2018-08-23 10:06:47 -04:00
4b2629d8ba recompile/recompute/reinit -> re-compile/re-compute/re-init 2018-08-22 22:18:16 -04:00
01fe356904 first version of scafacos.h without the inclusion of the ScaFaCoS header 2018-08-22 17:18:36 -06:00
8930a88e99 enrich the AIMD interface 2018-08-22 15:12:52 -06:00
fd56124a94 corrected remap call and logic for check if correct solver / tolerance combinations are set 2018-08-22 14:17:21 -06:00
89a3670fb5 merge master into cslib branch, update docs 2018-08-22 11:19:55 -06:00
a9fb8636ad doc page updates and changed domain->remap() call 2018-08-22 09:52:44 -06:00
9a15d0bd83 Merge branch 'master' into scafacos 2018-08-22 09:25:29 -06:00
b47e492233 patch 22Aug18 2018-08-22 08:45:41 -06:00
2baa0b3452 nasty little bug 2018-08-22 03:32:17 -06:00
fd0b041e0e remove debugging comments 2018-08-21 21:10:34 -06:00
bfd711ad12 fixed missing initialization of xpbc as well as deallocation in constructor 2018-08-21 17:29:38 -06:00
3573970e4a fixed double definition, removed virial check for p3m and removed unused function definition Scafacos::pack... 2018-08-21 17:04:52 -06:00
fc7d9ff558 apply PBC to coords passed to scafacos 2018-08-21 11:12:21 -06:00
95d462e5d3 bond/react: better template validity check
now always throws error if a bond type changes, but both of of the involved atoms are too close to edge of template
2018-08-21 02:28:53 -06:00
cca1e0a399 Merge branch 'master' into granular-kokkos 2018-08-20 22:02:41 -04:00
937d4707dc proposed SJP changes for 2nd cutoff_triple 2018-08-20 15:03:21 -06:00
f8e6e4275a Merge branch 'master' of https://www.github.com/lammps/lammps into port-enforce2d-kokkos 2018-08-20 15:12:11 -04:00
dd2a1e4787 Fix typos in pair_kim.cpp 2018-08-18 12:38:29 -05:00
d0667d21cc Merge branch 'master' into kim-v2-update 2018-08-18 12:23:19 -05:00
7aa7002347 Added check & error for KIM/LAMMPSvirial argument 2018-08-18 12:02:22 -05:00
9962f941e6 pair_kim - no need to comm vatom() values 2018-08-18 11:53:03 -05:00
73540e6b44 remove unneeded comments 2018-08-16 22:33:38 -04:00
b7d64e0374 patch 16Aug18 2018-08-16 11:55:57 -06:00
ccacf0d4bb Merge pull request #1048 from lammps/doc-reorg-start
Documentation Refactoring: Section Start
2018-08-15 15:25:17 -06:00
6069d392a3 favor qsort over mergesort for stable release 2018-08-15 16:44:31 -04:00
c9131cf1de drop FFTW2 support, and change doc pages 2018-08-15 13:54:37 -06:00
7ec52784cb more changes to doc pages and CMakeLists.txt 2018-08-14 15:44:25 -06:00
dde0974a1a Update for corrected neighbor list hint 2018-08-13 22:34:42 -05:00
9765a9a430 Implementing forward/border comm in Kokkos. 2018-08-13 16:03:23 +01:00
165fa01a97 Cleanup 2018-08-10 14:23:51 -06:00
8f665a5a0f Update Kokkos docs for data duplication 2018-08-10 13:46:03 -06:00
6f1986a8f1 Small tweaks to Kokkos EAM 2018-08-10 13:10:02 -06:00
eb4d586493 Remove duplicate if test in fix_qeq_reax_kokkos 2018-08-10 12:53:27 -06:00