Commit Graph

9534 Commits

Author SHA1 Message Date
c6186bf00d whitespace and formatting update 2018-07-31 17:36:49 +02:00
e9d40d3c6d rename class from PairCDEAM to PairEAMCD 2018-07-31 17:16:18 +02:00
67e70316de rename pair_cdeam.* to pair_eam_cd.* 2018-07-31 16:58:44 +02:00
f3615e83e8 move pair style eam/cd from USER-MISC to MANYBODY and update docs accordingly 2018-07-31 09:18:37 +02:00
2bb11ef47a Merge pull request #1021 from akohlmey/spin-package-fixes
SPIN package fixes, especially for DMI
2018-07-30 10:39:35 -06:00
28993d9823 Commit JT 072618
- improvements documentation (dmi and exchange)
- correction error cross product in pair_spin_dmi.cpp
- implementation mech. part in pair_spin_dmi.cpp
- correction in all pairs: init_one for [j][i] couples
- correction in atom_vec_spin.cpp: index error in read_data
- some improvements in pair_spin_dmi.cpp and pair_spin_magelec.cpp
2018-07-27 12:00:15 +02:00
649d0167c8 sorted out restart 2018-07-27 10:41:01 +01:00
2af88dcc26 avoid uninitialized variables 2018-07-27 10:39:01 +02:00
8075b98fc5 initialize rsqinv 2018-07-27 10:24:38 +02:00
f63e2b6eaf simplify code and guarantee that "mode" is initialized 2018-07-27 10:24:15 +02:00
a2303e5a15 more changes to ATM source and doc file 2018-07-26 11:54:04 +01:00
7cae80b6d8 Merge https://github.com/lammps/lammps
more changes to ATM source and doc file
2018-07-26 11:42:53 +01:00
1d9ad55796 changes to Errors and Python doc pages 2018-07-25 14:10:00 -06:00
0fc789bae5 Merge pull request #1015 from akohlmey/allow-commands-after-exception
Re-allow commands after an exception was caught inside a run.
2018-07-25 08:43:02 -06:00
8d49d1a8c5 Merge pull request #1010 from lammps/latte-checksum
new checksum for LATTE download
2018-07-25 08:42:35 -06:00
45532b7106 Merge pull request #996 from marshallmcdonnell/fix_tail_in_gcmc
Fixes #995: Added tail correction to fix gcmc
2018-07-25 08:41:37 -06:00
c3661272f1 re-allow commands after an exception was caught inside a run.
after an exception "all bets are off",
i.e. the user should be allowed to do anything to recover.
through setting Update::whichflag to 0, the guard against running commands during a run is removed.
2018-07-24 19:55:39 -04:00
a4dbac63d3 more updates to the new MESSAGE package 2018-07-24 17:22:15 -06:00
ab1cc706cc change syntax of standard C include files 2018-07-24 11:55:56 -06:00
b08a2fcd3b mended un-done changes from Git master 2018-07-24 11:36:12 -06:00
e37ee02eed port nh fixes to USER-BOCS package 2018-07-24 11:19:00 -04:00
57ad197b7d port nh fixes to KOKKOS 2018-07-24 10:48:06 -04:00
1b7af5d93b added the computation of the global virial by ScaFaCoS 2018-07-23 16:24:16 -06:00
ef3fd1374a added kspace_style for internal fmm tuning (for inhomogenous systems) and fixed the call to fcs_set_tolerance 2018-07-23 16:11:18 -06:00
2f55981224 new MESSAGE package for client/server/coupling 2018-07-23 15:58:33 -06:00
2ac3953e17 update src/Purge.list to cleanly remove obsolete files 2018-07-23 12:37:05 -04:00
6ab93b52bc Merge remote-tracking branch 'lammps/master' into kim-v2-update 2018-07-23 09:30:43 -05:00
5c21d2aff9 Merge pull request #962 from ndtrung81/body-dem
Discrete element models for the BODY package
2018-07-20 14:37:41 -06:00
de8176b4fc various minor OpenCL related fixes and improvements to the GPU package
- document previously undocumented OpenCL tune settings
- implement OpenCL platform selection through prefixing the device type with the platform id separated by a colon
- allow passing custom tune parameters though postfixing the device type with the 13 tuneable parameters separated by commas
- remove an extra clear() that would delete device properties structs an cause LAMMPS to output garbage strings
2018-07-20 14:41:54 -04:00
407708dcd2 reverted change to kspace call and using domain->boxlo for origin for now 2018-07-20 10:38:18 -06:00
fba165d6b2 changed the files according to remarks by Steve (compare to previous commit) 2018-07-19 11:46:56 -06:00
591e782415 Optimizing PairGranHookeHistoryKokkos to be less divergent. 2018-07-19 17:08:44 +01:00
c0a7cabcba Added GPLv2 exception to link to kim-api in pair_kim.* 2018-07-18 22:15:23 -05:00
a62b65096b more error checks for Scafacos usage 2018-07-18 15:48:17 -06:00
b0c9fde1dd more changes from Steve 2018-07-18 15:32:03 -06:00
1a959a5683 must add USER-SCAFACOS to PACKLIB variable in Makefile
We need "make no-lib" to be correct for automated testing to work, since only known packages with libraries can be successfully compiled through jenkins and other tools. Those scripts usually do "make yes-all no-lib" and then "make yes-XXX" for selected packages where it is known how to build the required libs.
2018-07-18 13:26:45 -04:00
eebd075a15 added scaling for different units (lj, metal, ...) and storage of atom-wise potentials (eatom / eatom_flag) 2018-07-18 11:05:54 -06:00
f9c7fa973b USER-DPD: propagate a minor performance bugfix throughout the DPDE code
The fix_shardlow_kokkos.cpp code had already factored out a redundant
sqrt() calculation in the innermost loop of ssa_update_dpde().  This
changeset propagates an equivilent optimization to:
  fix_shardlow.cpp
  pair_dpd_fdt_energy.cpp
  pair_dpd_fdt_energy_kokkos.cpp
The alpha_ij variable was really just an [itype][jtype] lookup parameter,
replacing a sqrt() and two multiplies per interacting particle pair
by a cached memory read.  Even if there isn't much time savings, the
code is now consistent across the various versions.
2018-07-18 10:50:22 -05:00
843b96e8dd more changes to new polygon/hedron docs and command names 2018-07-18 08:49:42 -06:00
54e33bd72b Merge branch 'master' of https://github.com/sergeylishchuk/lammps 2018-07-17 14:00:38 +01:00
dbd0d2180e Merge https://github.com/lammps/lammps 2018-07-17 11:22:41 +01:00
62c8ba7824 pair_kim : private to protected and add virtual to all routines 2018-07-16 21:21:28 -05:00
e37e9cfa2f Add virtual set_contributing() to pair_kim 2018-07-16 19:46:00 -05:00
fa73fab5df patch 16Jul18 2018-07-16 18:12:15 -06:00
783839e985 add support for restarting extra/XXX/per/atom settings in binary restarts 2018-07-16 15:21:52 -04:00
d4385ade15 more changes to ATM source and doc file 2018-07-16 11:22:22 -06:00
c589029219 Merge pull request #1002 from rbberger/set_velocity_command
Allow 'set' command to change atom velocities
2018-07-16 08:50:15 -06:00
140767be16 Merge pull request #1001 from stanmoore1/kk_bugfix
Fix rare crash in Kokkos ReaxFF on GPUs
2018-07-16 08:49:30 -06:00
5fc4aaef06 Merge pull request #940 from Pakketeretet2/port-enforce2d-kokkos
Port enforce2d kokkos
2018-07-16 08:48:21 -06:00
406aaf011f Improving global memory access pattern for firstflag and firstvalue in FixNeighHistoryKokkos. 2018-07-16 15:30:24 +01:00