Commit Graph

9534 Commits

Author SHA1 Message Date
5210c4c3a4 cosmetic reformatting of new GRANULAR files 2019-03-27 16:58:14 -06:00
6b09f6d490 bug fix for tiled communication at cutoffs near box size 2019-03-27 15:51:10 -06:00
28a6dcd1c3 Merge pull request #1384 from lammps/rendezvous2
second attempt at adding rendezvous protocol for some to some communication.
2019-03-27 17:44:16 -04:00
2ad9355140 Merge pull request #1383 from akohlmey/final-changes-for-patch
Several small changes and tweaks for patch release
2019-03-27 17:00:56 -04:00
e63d2cee87 Merge pull request #1375 from akohlmey/install-python-for-cmake
Refactor python module installer and add install-python target to CMake
2019-03-27 16:47:25 -04:00
b685a0a7b8 need to use fabs() when computing deltas when checking image flags for consistency 2019-03-27 15:47:14 -04:00
8a384df5c3 use utils::strmatch() instead of strncmp() 2019-03-27 06:19:42 -04:00
8ba1d76055 some dead code removal and more whitespace cleanup 2019-03-27 05:38:41 -04:00
af8f06141f Step version string for next patch release 2019-03-26 23:02:07 -04:00
b6b0d0b30e minor whitespace cleanup commit to retrigger PR tests on github 2019-03-26 16:43:09 -04:00
5a6a8a9e57 Merge pull request #1379 from lammps/hyper
Hyper-dynamics update
2019-03-26 16:30:37 -04:00
26b90727b3 whitespace cleanup 2019-03-26 13:26:09 -04:00
cf349633f7 cosmetic changes 2019-03-26 13:09:49 -04:00
efad31f474 bug fixes to added rendezvous algorithms 2019-03-26 10:09:16 -06:00
fff28a8666 remove trailing whitespace 2019-03-26 11:17:21 -04:00
1266b866e0 add some degree of endian detection to hashlittle.cpp 2019-03-26 11:01:39 -04:00
1ca0c78a2e turn off diagnostic output for rendezvous op 2019-03-26 11:01:39 -04:00
0bf6b91576 bug fix for new fix shake redezvous comm 2019-03-26 11:01:39 -04:00
62045a9c52 cleanup up rendezvous diagnostic output 2019-03-26 11:01:38 -04:00
bbe6c9bb63 added diagnostic info for memory and balance info 2019-03-26 11:01:38 -04:00
fc002e30d3 added rendezvous via all2all 2019-03-26 11:01:38 -04:00
981f12ebeb fix a small memory leak in SHAKE setup 2019-03-26 11:01:38 -04:00
b370a61b60 added rendezvous alg to fix shake 2019-03-26 11:01:38 -04:00
a3a16acead propagate rendezvous changes to fix rigid/small 2019-03-26 11:01:38 -04:00
17817fc290 less comm version of special bonds rendezvous 2019-03-26 11:01:38 -04:00
3f9d59294e replace STL map with atom->map in special, better code comments 2019-03-26 11:01:37 -04:00
9912c44413 rendevous comm option for special bonds and fix rigid/small 2019-03-26 11:01:33 -04:00
8c99752cec Add fix elstop to USER-MISC
Implements inelastic energy loss for fast particles in solids.
2019-03-26 10:08:20 +02:00
82d646cede print warning about missing fix nve/spin only on MPI rank 0 2019-03-25 20:59:22 -04:00
7b3f952990 whitespace cleanup and dead code removal 2019-03-25 20:50:39 -04:00
b8c4e09b27 Put #ifdef around #include "curl/curl.h" in kim_query.cpp 2019-03-25 19:14:08 -05:00
81a4d293db Commit4 JT 032519
- corrected documentation (errors in min_spin.txt and
min_modify.txt)
- changed the code accordingly
2019-03-25 15:43:58 -06:00
cb92bccdff Merge pull request #1238 from lammps/rendezvous
Implement rendezvous protocol for more efficient communication setup for large number of MPI ranks
2019-03-25 17:20:00 -04:00
30be5e94d9 Commit3 JT 032519
- updated the README file
- updated examples/SPIN/spinmin/
2019-03-25 14:22:16 -06:00
7a00997a14 Commit2 JT 032519
- added equations for documentation
- updated examples (not calling fix nve/spin)
- replaced error message by warning in all pair/spin
2019-03-25 14:03:28 -06:00
a726362888 Commit JT 032519
- adding all min files into new branch
- preparing branch for pull request of spin minimizer
2019-03-25 12:57:42 -06:00
3e8c1c801b add some degree of endian detection to hashlittle.cpp 2019-03-25 14:03:29 -04:00
2f20581b29 Merge pull request #1374 from akohlmey/collected-small-fixes
Collected small changes for the next patch release
2019-03-25 13:15:45 -04:00
5d54e888d5 Merge pull request #1371 from akohlmey/add-kim-query
Add kim_query command to KIM package
2019-03-25 13:15:20 -04:00
1bd47f0318 Merge pull request #1365 from martok/meamc-evclear
Consolidate clearing of eflags and vflags
2019-03-25 13:14:59 -04:00
b055837f49 Merge pull request #1372 from julient31/minprec_spin
Add min_post_force in fix_precession_spin
2019-03-25 13:14:46 -04:00
eedc88eb9b MPI_Abort removed from reax/c/kk + fixed some declarations 2019-03-25 18:01:31 +01:00
88755aefca Added support for reax/c/omp 2019-03-25 17:44:52 +01:00
ab748ffe48 turn off diagnostic output for rendezvous op 2019-03-25 10:29:06 -06:00
a20d58312d add missing convesion to fractional coordinates and back for enforced PBC dumps of triclinic cells 2019-03-25 12:25:50 -04:00
e04ab51970 bug fix for new fix shake redezvous comm 2019-03-25 10:20:32 -06:00
a89a2de9d4 Removed unnecessary MPI_comm 2019-03-25 16:45:59 +01:00
b2a7205abe re-order ev_init() and ev_setup() so that 'init' comes before 'setup' as requested by @sjplimp 2019-03-25 11:31:23 -04:00
881cc71a44 Merge branch 'master' into hyper 2019-03-25 09:21:09 -06:00
83e458af0b Cleaning changes 2 2019-03-25 15:22:20 +01:00