Commit Graph

9534 Commits

Author SHA1 Message Date
a5c93e75a5 ignore src/lmpgitversion.h 2019-03-07 15:12:22 -05:00
3bc815efe8 fix a memory leak in fix bocs 2019-03-07 15:11:33 -05:00
9cb2a56194 Remove deprecated Kokkos code 2019-03-07 10:47:40 -07:00
0edc588458 Replace deprecated Kokkos capacity() with span() 2019-03-07 10:23:17 -07:00
f0e48931e4 Remove deprecated KOKKO_HAVE macros 2019-03-07 10:17:32 -07:00
9408dd6e92 use simpler way whether we are inside a git checkout in conventional build 2019-03-06 18:41:43 -05:00
9a6dc2ff11 Removed several files that should not have been included 2019-03-06 13:54:32 -07:00
4a17cb3467 Merge pull request #1357 from akohlmey/embed-git-revision
Embed git branch and revision info into LAMMPS class
2019-03-05 23:31:16 -05:00
c5a3b034ce implement various suggestions to improve the use of git information gathered 2019-03-05 17:29:34 -05:00
bfa950a7e9 Added initialization for grown arrays 2019-03-05 22:40:10 +01:00
390fc873bc Merge pull request #1355 from julient31/bfo_spin
bugfix update for SPIN package
2019-03-05 14:27:28 -05:00
6b8a768f6c Merge pull request #1356 from akohlmey/address-user-smtbq-vla-issue
Address Variable-Length-Array issues, memory leaks, uninitialized data access issues in USER-SMTBQ
2019-03-05 14:26:30 -05:00
146e2f283a Better error handling in reaxc_forces 2019-03-05 19:11:33 +01:00
1c7d191988 also print git version (if available) in multi-partition runs and in help message 2019-03-05 09:03:12 -05:00
1e573bd557 when compiling LAMMPS in a git checkout, embed and print git branch and revision info into the executable 2019-03-05 08:35:53 -05:00
fa7b5ecfa3 disable chimet array in pair style smtbq, which was never set anywhere 2019-03-05 00:45:40 -05:00
6ed8fbbd51 handle uninitialized data access issues and out-of-bounds access for single element calculations 2019-03-04 18:01:55 -05:00
0d1524526a work around the remaining variable length array cases. fix an off-by-one error, too. 2019-03-04 17:26:55 -05:00
ab0c35be93 Commit JT 030419
- correction of pair_spin calculations
- corrects an error between i and ii lists in single/pair calc.
2019-03-04 08:04:11 -07:00
849e52040a Merge branch 'clean-master2' of github.com:julient31/lammps into bfo_spin 2019-03-04 07:51:12 -07:00
f0ec2e3279 refactoring of global and local hyper, including amended doc pages 2019-03-01 18:47:34 -07:00
5ecbb8bd01 fix int vs. bigint issue and add NULL file pointer check to dynamical_matrix 2019-03-01 09:46:13 -05:00
30ee2f3d78 avoid windows portability issues with int32_t 2019-03-01 09:37:38 -05:00
0f0a65bb48 plug small memory leak in USER-ADIOS 2019-03-01 09:37:33 -05:00
d8845b6817 Added initialization of the entire num_bonds and num_hbonds arrays 2019-03-01 13:13:11 +01:00
87a243203b Removed pair_granular.cpp/h from src directory 2019-02-28 16:46:21 -07:00
5486896876 Merge pull request #1350 from akohlmey/next-patch-release
Step version string for next patch release
2019-02-28 17:56:51 -05:00
47b0c77dd9 replace variable length arrays with std::vector 2019-02-28 17:53:50 -05:00
fbc9cf8354 fix huge memory leak 2019-02-28 17:53:17 -05:00
14e6c126a8 Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix
add command to compute the Dynamical Matrix
2019-02-28 17:08:36 -05:00
1d2eab5e1b update attribution information in Package details documentation 2019-02-28 15:26:36 -05:00
7062bc862e remove third_order command and ASE based examples to be added in a new pull request 2019-02-28 15:21:48 -05:00
9298fe7868 fix segfault and copy-n-modify issues with third order command 2019-02-28 14:45:42 -05:00
16946d8c6d integrate dynamical_matrix command into LAMMPS manual 2019-02-28 14:45:07 -05:00
286112ffbc count each force computation as one simulation step. this avoids accessing uninitialized data, too. 2019-02-28 11:00:55 -05:00
326a97624e Merge pull request #1317 from ornladios/adios2-master
USER-ADIOS package with ADIOS 2.x
2019-02-27 17:24:12 -05:00
6bd56c2a85 update author attribution 2019-02-27 17:08:13 -05:00
6bf9c06a5a Step version string for next patch release 2019-02-27 16:19:20 -05:00
9cc7bea05d bugfix for changes in #1340 2019-02-27 16:09:46 -05:00
ba320967a5 fix variable delete bug reported in #1346 2019-02-27 16:08:41 -05:00
eb39866e87 Merge pull request #1340 from akohlmey/bonus-data-checks
Bonus data checks and updates. Part 1
2019-02-27 15:10:58 -05:00
0efc3765f8 add warning when writing incomplete data file due to bonus data 2019-02-27 14:57:25 -05:00
c4d081b507 hide output to stderr when looking for adios-config. we only need the error status. 2019-02-27 14:16:36 -05:00
eea30c5b76 half-bond lists and no bond migration for local hyper 2019-02-26 16:17:31 -07:00
de29763d1a new attempt at the create_atoms optimization for small regions in large boxes
this passes the test input with the rotated lattice
2019-02-25 17:11:54 -05:00
394fd751d1 Merge pull request #1344 from erozic/bugfix-library-scatter-subset
Fixed bug in lammps_scatter_atoms_subset...
2019-02-22 15:10:33 -05:00
e6df92e65a Merge pull request #1011 from ellio167/kim-v2-update
KIM v2 update
2019-02-21 20:06:59 -05:00
e6a7c8b03b Merge pull request #1335 from donatas-surblys/langevin-tally-zero
correct fix langevin with tally yes zero yes
2019-02-21 20:06:44 -05:00
b38033bc59 Fixed bug in lammps_scatter_atoms_subset...
- ids was ignored for the single-value integer arrays (e.g. type, id, ...)
2019-02-21 01:07:46 +01:00
a5f20305d4 Add user-adios to PACKLIB and PACKEXT 2019-02-20 16:28:51 -05:00