Commit Graph

17038 Commits

Author SHA1 Message Date
1e573bd557 when compiling LAMMPS in a git checkout, embed and print git branch and revision info into the executable 2019-03-05 08:35:53 -05:00
bc4a80d9e8 Merge pull request #1354 from akohlmey/collected-small-fixes
Collected small fixes and updates for the next patch release
2019-03-05 00:55:36 -05:00
fa7b5ecfa3 disable chimet array in pair style smtbq, which was never set anywhere 2019-03-05 00:45:40 -05:00
6ed8fbbd51 handle uninitialized data access issues and out-of-bounds access for single element calculations 2019-03-04 18:01:55 -05:00
0d1524526a work around the remaining variable length array cases. fix an off-by-one error, too. 2019-03-04 17:26:55 -05:00
ab0c35be93 Commit JT 030419
- correction of pair_spin calculations
- corrects an error between i and ii lists in single/pair calc.
2019-03-04 08:04:11 -07:00
849e52040a Merge branch 'clean-master2' of github.com:julient31/lammps into bfo_spin 2019-03-04 07:51:12 -07:00
f0ec2e3279 refactoring of global and local hyper, including amended doc pages 2019-03-01 18:47:34 -07:00
5ecbb8bd01 fix int vs. bigint issue and add NULL file pointer check to dynamical_matrix 2019-03-01 09:46:13 -05:00
30ee2f3d78 avoid windows portability issues with int32_t 2019-03-01 09:37:38 -05:00
0f0a65bb48 plug small memory leak in USER-ADIOS 2019-03-01 09:37:33 -05:00
d8845b6817 Added initialization of the entire num_bonds and num_hbonds arrays 2019-03-01 13:13:11 +01:00
87a243203b Removed pair_granular.cpp/h from src directory 2019-02-28 16:46:21 -07:00
5486896876 Merge pull request #1350 from akohlmey/next-patch-release
Step version string for next patch release
patch_28Feb2019
2019-02-28 17:56:51 -05:00
47b0c77dd9 replace variable length arrays with std::vector 2019-02-28 17:53:50 -05:00
fbc9cf8354 fix huge memory leak 2019-02-28 17:53:17 -05:00
c555f7e2ed update permissions 2019-02-28 17:52:53 -05:00
14e6c126a8 Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix
add command to compute the Dynamical Matrix
2019-02-28 17:08:36 -05:00
50fef541c2 add x-ref 2019-02-28 15:50:59 -05:00
5fd033c0a2 add one more false positive required by recent changes 2019-02-28 15:49:48 -05:00
1d2eab5e1b update attribution information in Package details documentation 2019-02-28 15:26:36 -05:00
7062bc862e remove third_order command and ASE based examples to be added in a new pull request 2019-02-28 15:21:48 -05:00
9298fe7868 fix segfault and copy-n-modify issues with third order command 2019-02-28 14:45:42 -05:00
16946d8c6d integrate dynamical_matrix command into LAMMPS manual 2019-02-28 14:45:07 -05:00
286112ffbc count each force computation as one simulation step. this avoids accessing uninitialized data, too. 2019-02-28 11:00:55 -05:00
326a97624e Merge pull request #1317 from ornladios/adios2-master
USER-ADIOS package with ADIOS 2.x
2019-02-27 17:24:12 -05:00
80392224cd Merge pull request #1351 from ellio167/kim-2.0.1
Bump KIM API version to 2.0.1
2019-02-27 17:21:30 -05:00
b60f0f754c small tweaks to USER-ADIOS docs 2019-02-27 17:18:08 -05:00
6bd56c2a85 update author attribution 2019-02-27 17:08:13 -05:00
a4e580879c Merge pull request #1347 from akohlmey/collected-small-fixes
Collected small fixes for the next patch release
2019-02-27 17:02:21 -05:00
54e5c76333 Bump KIM API version to 2.0.1 2019-02-27 15:50:08 -06:00
6bf9c06a5a Step version string for next patch release 2019-02-27 16:19:20 -05:00
9cc7bea05d bugfix for changes in #1340 2019-02-27 16:09:46 -05:00
099b9baf0d update blob about providing a suitable e-mail contact in PR template 2019-02-27 16:08:42 -05:00
28f1ad9145 update License section to unconditionally confirm GPL and LGPL licensing 2019-02-27 16:08:41 -05:00
f178cc0a73 add template for help requests and generic issues
NOTE: the help request issue template actually asks people
to post to the lammps-users mailing list.
2019-02-27 16:08:41 -05:00
9185f28a12 correct compute group/group documentation for use with EAM styles 2019-02-27 16:08:41 -05:00
229ded45ee pull request template update 2019-02-27 16:08:41 -05:00
ba320967a5 fix variable delete bug reported in #1346 2019-02-27 16:08:41 -05:00
73401d02c0 convert a couple of inputs from using pair style reax to reax/c 2019-02-27 16:08:41 -05:00
eb39866e87 Merge pull request #1340 from akohlmey/bonus-data-checks
Bonus data checks and updates. Part 1
2019-02-27 15:10:58 -05:00
0efc3765f8 add warning when writing incomplete data file due to bonus data 2019-02-27 14:57:25 -05:00
05774ed894 Merge pull request #1315 from jan-janssen/patch-1
Adjust LAMMPS python module for compiling the shared library with CMake, which uses a different extension on MacOS X.
2019-02-27 14:46:53 -05:00
c4d081b507 hide output to stderr when looking for adios-config. we only need the error status. 2019-02-27 14:16:36 -05:00
9bec93faa9 update spell-checking false positives for USER-ADIOS package 2019-02-26 19:51:18 -05:00
9178b9446a remove trailing whitespace 2019-02-26 19:50:50 -05:00
eea30c5b76 half-bond lists and no bond migration for local hyper 2019-02-26 16:17:31 -07:00
36b8271e04 Merge pull request #1348 from akohlmey/create-atoms-optimization
Optimization for create_atoms with regions (2nd attempt)
2019-02-26 12:19:37 -05:00
de29763d1a new attempt at the create_atoms optimization for small regions in large boxes
this passes the test input with the rotated lattice
2019-02-25 17:11:54 -05:00
394fd751d1 Merge pull request #1344 from erozic/bugfix-library-scatter-subset
Fixed bug in lammps_scatter_atoms_subset...
2019-02-22 15:10:33 -05:00