Commit Graph

16738 Commits

Author SHA1 Message Date
dbd458e9e3 update micelle example with corrected data file and rigid body input 2019-03-26 16:35:35 -04:00
6e7f13e6f9 Merge branch 'kim_query' of https://github.com/ellio167/lammps into final-changes-for-patch 2019-03-25 21:19:23 -04:00
4e74ccbbbe restore building developer pdf before manual pdf 2019-03-25 21:18:17 -04:00
b0a07f189c must use top-level dir to get the correct modified status 2019-03-25 21:18:17 -04:00
b8c4e09b27 Put #ifdef around #include "curl/curl.h" in kim_query.cpp 2019-03-25 19:14:08 -05:00
cb92bccdff Merge pull request #1238 from lammps/rendezvous
Implement rendezvous protocol for more efficient communication setup for large number of MPI ranks
2019-03-25 17:20:00 -04:00
3e8c1c801b add some degree of endian detection to hashlittle.cpp 2019-03-25 14:03:29 -04:00
2f20581b29 Merge pull request #1374 from akohlmey/collected-small-fixes
Collected small changes for the next patch release
2019-03-25 13:15:45 -04:00
5d54e888d5 Merge pull request #1371 from akohlmey/add-kim-query
Add kim_query command to KIM package
2019-03-25 13:15:20 -04:00
1bd47f0318 Merge pull request #1365 from martok/meamc-evclear
Consolidate clearing of eflags and vflags
2019-03-25 13:14:59 -04:00
b055837f49 Merge pull request #1372 from julient31/minprec_spin
Add min_post_force in fix_precession_spin
2019-03-25 13:14:46 -04:00
34d1ed9b54 Merge pull request #1376 from junghans/cmake_gitversion
cmake: move lmpgitversion generation to build phase
2019-03-25 13:14:30 -04:00
ab748ffe48 turn off diagnostic output for rendezvous op 2019-03-25 10:29:06 -06:00
a20d58312d add missing convesion to fractional coordinates and back for enforced PBC dumps of triclinic cells 2019-03-25 12:25:50 -04:00
e04ab51970 bug fix for new fix shake redezvous comm 2019-03-25 10:20:32 -06:00
b2a7205abe re-order ev_init() and ev_setup() so that 'init' comes before 'setup' as requested by @sjplimp 2019-03-25 11:31:23 -04:00
414f9b25d1 cmake: move lmpgitversion generation to build phase 2019-03-23 08:01:41 -06:00
d5074b39a0 Merge pull request #57 from ellio167/add-kim-query
Update kim example query and log files
2019-03-22 21:42:06 -04:00
3464464ea9 Update kim example query and log files 2019-03-22 20:20:47 -05:00
52f9e4a960 allow overriding the location of the molfile plugin headers with CMake 2019-03-22 14:11:02 -04:00
cd6b23d104 explicitly request OpenCL version 1.2 compatibility when compiling GPU package kernels for OpenCL 2019-03-22 09:50:31 -04:00
75d63df4e0 fix small memory leak in pair style hybrid when reading restarts 2019-03-22 05:41:32 -04:00
8916aeb36d update for README to USER-SMTBQ with up-to-date maintainer e-mails 2019-03-22 05:25:14 -04:00
b975d59d9f make use of copymode flag in pair style destructors consistent 2019-03-22 05:15:02 -04:00
8f90d6c6d0 must bracket 'memory->destroy()' calls in destructor with 'if (allocated)' 2019-03-22 04:55:13 -04:00
1e8ccb1774 initialize setflag and cutsq pointers to NULL, so they are not accessed uninitialized by accident 2019-03-22 04:54:06 -04:00
76b9c0049d Merge pull request #1359 from martok/dynamical-matrix
Updates and bugfixes to the dynamical_matrix command
2019-03-20 21:34:34 -04:00
86810c2d7c Commit2 JT 031919
- correct error in fix_precession_spin
- only the sign of the force needed a correction
2019-03-19 22:44:26 -06:00
a508f1de6c Commit JT 031919
- correct. error in fix_prec_spin
- added min_post_force in fix_prec_spin
2019-03-19 22:30:44 -06:00
2dbc2c5916 fix spelling issues in documentation and some minor clarification 2019-03-19 16:04:53 -04:00
1c3e3ce548 add kim_query command to commands list 2019-03-19 15:57:19 -04:00
fed48427be update lib/kim/Install.py to support md5 checksum. update CMake support as needed 2019-03-19 15:48:03 -04:00
38c373a0e4 integrate new kim_query command into the documentation environment 2019-03-19 15:42:35 -04:00
741a7fe630 final touches to support compiling with libcurl transparently 2019-03-19 15:40:49 -04:00
7a8bb5baaf come code cleanup and refactoring 2019-03-19 15:33:53 -04:00
02b800a3bb add template for new kim_query command 2019-03-19 15:33:48 -04:00
a626efbca0 Merge pull request #1370 from akohlmey/write-data-for-dihedrals-fixes
Enable write_data for more dihedral styles and related corrections
2019-03-19 13:55:15 -04:00
487671c46b enable write_data functionality for more dihedral styles 2019-03-19 12:10:30 -04:00
e87e215bcc enable and correct write_data output for dihedral style spherical 2019-03-19 12:02:25 -04:00
c0c61268ee store only dihedral style info in restart, no coeffs 2019-03-19 11:56:23 -04:00
cf8bee9b46 remove unused and redundant data elements. no write_data support for tables. 2019-03-19 11:43:29 -04:00
2558509b70 Merge pull request #1366 from jrgissing/bond/react-delete_internal_groups
Bond/react: unfixing deletes internal groups
2019-03-14 19:29:39 -04:00
5608f87c15 bond/react:unfix_deletes_internal_groups 2019-03-13 21:55:17 -06:00
5556567e91 Merge pull request #46 from lammps/master
rebase
2019-03-13 21:41:08 -06:00
985fc86aa3 use ev_init for kspace 2019-03-13 17:55:30 +01:00
ff2d8e55c9 use ev_init for bonds 2019-03-13 17:54:10 +01:00
fbd600592b use ev_init for dihedrals 2019-03-13 17:53:22 +01:00
6e6f903818 use ev_init for angles 2019-03-13 17:51:41 +01:00
c7af948dfc use ev_init for impropers 2019-03-13 17:50:50 +01:00
17c81295c2 use ev_init for fixes 2019-03-13 17:50:10 +01:00