4e74ccbbbe
restore building developer pdf before manual pdf
2019-03-25 21:18:17 -04:00
2f20581b29
Merge pull request #1374 from akohlmey/collected-small-fixes
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Collected small changes for the next patch release
2019-03-25 13:15:45 -04:00
3464464ea9
Update kim example query and log files
2019-03-22 20:20:47 -05:00
52f9e4a960
allow overriding the location of the molfile plugin headers with CMake
2019-03-22 14:11:02 -04:00
2dbc2c5916
fix spelling issues in documentation and some minor clarification
2019-03-19 16:04:53 -04:00
1c3e3ce548
add kim_query command to commands list
2019-03-19 15:57:19 -04:00
38c373a0e4
integrate new kim_query command into the documentation environment
2019-03-19 15:42:35 -04:00
5608f87c15
bond/react:unfix_deletes_internal_groups
2019-03-13 21:55:17 -06:00
b628e3b1b6
Update openkim.org urls in various places
2019-03-06 10:26:03 -06:00
5486896876
Merge pull request #1350 from akohlmey/next-patch-release
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Step version string for next patch release
2019-02-28 17:56:51 -05:00
14e6c126a8
Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix
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add command to compute the Dynamical Matrix
2019-02-28 17:08:36 -05:00
50fef541c2
add x-ref
2019-02-28 15:50:59 -05:00
5fd033c0a2
add one more false positive required by recent changes
2019-02-28 15:49:48 -05:00
1d2eab5e1b
update attribution information in Package details documentation
2019-02-28 15:26:36 -05:00
16946d8c6d
integrate dynamical_matrix command into LAMMPS manual
2019-02-28 14:45:07 -05:00
326a97624e
Merge pull request #1317 from ornladios/adios2-master
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USER-ADIOS package with ADIOS 2.x
2019-02-27 17:24:12 -05:00
b60f0f754c
small tweaks to USER-ADIOS docs
2019-02-27 17:18:08 -05:00
6bf9c06a5a
Step version string for next patch release
2019-02-27 16:19:20 -05:00
9185f28a12
correct compute group/group documentation for use with EAM styles
2019-02-27 16:08:41 -05:00
9bec93faa9
update spell-checking false positives for USER-ADIOS package
2019-02-26 19:51:18 -05:00
9178b9446a
remove trailing whitespace
2019-02-26 19:50:50 -05:00
d76569c033
Merge pull request #1320 from eofetis/manual-pdf-support
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Add support for Sphinx+PDF+MathJax
2019-02-22 15:10:13 -05:00
e6df92e65a
Merge pull request #1011 from ellio167/kim-v2-update
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KIM v2 update
2019-02-21 20:06:59 -05:00
e6a7c8b03b
Merge pull request #1335 from donatas-surblys/langevin-tally-zero
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correct fix langevin with tally yes zero yes
2019-02-21 20:06:44 -05:00
3ad268739b
Add dump adios to PDF build. Update example config with better documentation
2019-02-20 17:02:48 -05:00
2de01cef45
Dump atom/adios and dump custom/adios command notifications
2019-02-20 16:21:07 -05:00
1179beb543
Makefile build support for USER-ADIOS and build documentation
2019-02-20 14:42:28 -05:00
bae2e61fa0
documentation bugfix
2019-02-15 19:40:37 -05:00
8a28046b4c
typo in PTM docs
2019-02-15 18:52:40 -05:00
35d2de298f
added license information to all files
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updated documentation
added example file
added graphene structure
2019-02-15 18:49:23 -05:00
c193a9aee9
Updated Errors_messages.txt & false_positives.txt
2019-02-14 19:28:18 -06:00
e95cf4e917
Some various doc updates for kim-api support
2019-02-14 13:38:28 -06:00
333154633b
Merge branch 'master' into kim-v2-update
2019-02-14 13:29:50 -06:00
d0ed6f2bf5
reflect changes to fix langevin also in the manual
2019-02-14 05:45:52 -05:00
0108855930
update .gitignore for the doc folder
2019-02-14 02:54:02 -05:00
d08979737c
bond/react:partially_revert_bonding_atom_choice
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choose closest eligible bonding partner, unless directly bonded (in which case we assume a bond-breaking reaction)
2019-02-13 22:56:56 -07:00
88b62fa6bd
add old style PDF build to "make old" target.
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this will create the old style Manual.pdf in the old folder and put Developer.pdf there, too.
2019-02-13 12:43:35 -05:00
581b7d3543
update list of false positives after docs changes
2019-02-13 09:23:54 -05:00
eb8a6512e2
rename and document script to automatically convert 'default(none)' to 'default(shared)' OpenMP pragmas
2019-02-12 09:44:19 -05:00
a0b7bf0f5c
reformat fix wall/gran/region docs
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this should make it easier to recognize that these walls can be
moving/rotating/growing/shrinking due to using time dependent
equal style variables in the region definition
2019-02-12 08:07:28 -05:00
b29d526632
Merge pull request #1323 from akohlmey/next-patch-release
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Patch release 8 February 2019
2019-02-08 21:43:39 +01:00
77c24f1b79
Merge branch 'master' into next-patch-release
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# Conflicts:
# .github/PULL_REQUEST_TEMPLATE.md
2019-02-08 15:34:40 -05:00
f286155dd3
Merge pull request #1306 from stanmoore1/kk_angle_cosine
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Add Kokkos version of angle/cosine
2019-02-08 21:07:36 +01:00
b871b4e13d
Merge pull request #1321 from akohlmey/collected-small-fixes
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Collected small fixes for the next patch release
2019-02-08 17:19:01 +01:00
a35f407dfc
Patch release 8 February 2019
2019-02-08 17:15:22 +01:00
a71159578e
fix typo
2019-02-08 02:29:03 -05:00
622eb47902
some small tweaks, fixes for typos, and url corrections for the manual
2019-02-07 01:19:29 -05:00
019e534f80
some small tweaks, fixes for typos, and url corrections for the manual
2019-02-07 01:16:48 -05:00
7c1fb847f4
Slight tweak to sed in doc/Makefile
2019-02-06 18:00:23 -08:00
4fe6528ed4
Add support for Sphinx+PDF+MathJax
2019-02-06 17:14:50 -08:00
