Commit Graph

25445 Commits

Author SHA1 Message Date
ddc77be911 update docs for converting the plugin feature to a package 2021-03-16 23:52:44 -04:00
2a6fcee5e0 add missing file (was ignored by default) 2021-03-16 23:42:06 -04:00
78126c5eb3 fix cmake unit test issue 2021-03-16 23:32:08 -04:00
28e986c266 add python module support for plugins 2021-03-16 23:25:46 -04:00
125ae33ccf convert plugin functionality into a package 2021-03-16 23:00:16 -04:00
11894f83b9 clarify and fix grammar issues 2021-03-16 19:50:45 -04:00
31009b0517 Merge branch 'master' into plugin-loader 2021-03-16 19:46:21 -04:00
42895ac6df Merge pull request #2654 from akohlmey/collected-small-changes
Collected small changes
2021-03-16 19:34:54 -04:00
1b5a7e2e1e Merge pull request #2664 from rbberger/pylammps_update
PyLammps Examples update
2021-03-16 18:45:38 -04:00
2e45c84c6a Merge pull request #2655 from akohlmey/collected-refactoring
Collected small code refactoring changes
2021-03-16 18:39:30 -04:00
772190efd1 Merge pull request #2657 from rbberger/refactor_meam_reader
Refactor MEAMC potential reader
2021-03-16 17:14:34 -04:00
3eb9b21713 Merge pull request #2658 from akohlmey/more-unittests
Update and expand unit tests
2021-03-16 16:59:14 -04:00
c5a4488c23 Merge pull request #2663 from masterleinad/kokkos_avoid_intrinsics
Avoid intrinsics KOKKOS/npair_kokkos
2021-03-16 16:40:13 -04:00
3b9d5916c9 add backward compatibility for recent changes to KIM commands 2021-03-16 16:38:56 -04:00
5e3ddb6986 Use stable branch for checkout 2021-03-16 16:36:34 -04:00
45b01aba0c Update Jupyter notebooks 2021-03-16 15:18:07 -04:00
32a2ee6dc2 Update mc.ipynb 2021-03-16 14:38:26 -04:00
e9e1a96335 Update simply.ipynb 2021-03-16 14:22:26 -04:00
644b61cd1f Add __dir__() to Atom class 2021-03-16 14:21:19 -04:00
a8597de4be Add __dir__() to variable_set 2021-03-16 14:04:24 -04:00
dc435d8188 Improve indentation 2021-03-16 17:53:41 +00:00
e81fe91c2b don't output null pointers as strings with fmtlib in variable info list 2021-03-16 13:45:05 -04:00
1fae21622a remove trailing whitespace 2021-03-16 13:37:15 -04:00
3304dfcbfe don't output null pointers as strings with fmtlib in variable info list 2021-03-16 13:31:56 -04:00
ac32d907c0 Avoid intrinsics KOKKOS/npair_kokkos 2021-03-16 17:09:37 +00:00
d1b4af60a3 disable GPU binning via CUDPP by default and describe why 2021-03-16 11:58:47 -04:00
b4633bc2b2 Update PyLammps examples README 2021-03-16 11:49:24 -04:00
cf19197f79 revert change causing memory corruption. we need extra space in the allocated string buffer. 2021-03-16 10:03:22 -04:00
eb90fcecb1 simplify using utils::strdup() 2021-03-16 09:39:45 -04:00
1ef1a7d865 simplify using std::string 2021-03-16 09:39:28 -04:00
b7759b0cdb use ValueTokenizer instead of sscanf() for safer parsing of custom processor grids 2021-03-16 09:15:49 -04:00
5d5fc4a04d simplify by using utils::strdup() 2021-03-16 08:56:52 -04:00
2f8770971c make use of utils::strdup() and simplify 2021-03-16 01:17:10 -04:00
3d67d1eee9 simplify 2021-03-16 00:50:29 -04:00
c39d494ae4 update "magic" for restart files to have more information 2021-03-15 22:58:19 -04:00
68b6296f90 accept negative numbers for group definition by id 2021-03-15 21:53:27 -04:00
154ae86469 fix bug 2021-03-15 21:42:43 -04:00
f2890e39ef update to use new intel fortran compiler name
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-03-15 20:53:49 -04:00
f835d5e69e refactor utils::expand_args() 2021-03-15 20:50:26 -04:00
ece2433208 use utils::strdup() for duplicating strings 2021-03-15 17:55:19 -04:00
0808453618 remove dead code 2021-03-15 17:00:27 -04:00
a6a2879807 add a few more tokenizer test cases for added use cases. 2021-03-15 12:02:58 -04:00
63110fd588 replace use of strtok() with Tokenizer class 2021-03-15 12:02:38 -04:00
dbf7b9c24a simplify and get rid of strtok() 2021-03-15 11:28:25 -04:00
23e4078b4e use enumerator constants from base class 2021-03-15 11:27:57 -04:00
ffb86eb2ab fix bug 2021-03-15 11:27:27 -04:00
b13e5fa234 simplify using std::string and utils::strdup(); get rid of strtok() 2021-03-15 09:36:49 -04:00
16387eda40 Merge pull request #2659 from evoyiatzis/patch-2
Updating displace.mod
2021-03-15 07:43:48 -04:00
6a67df7ebc fix typo 2021-03-15 00:34:06 -04:00
88c6e5cb31 correctly identify new Intel compiler. mark old Intel compiler as "classic" 2021-03-15 00:32:31 -04:00