Commit Graph

28539 Commits

Author SHA1 Message Date
ddf97fa8fc tweak error messages 2021-11-24 15:34:43 -05:00
2a68c6edba add (global) restart support to fix charge/regulation 2021-11-24 15:34:30 -05:00
ae0f4dcfc1 generate atom tags for newly created atoms, if tags are enabled. triclinic support. 2021-11-24 15:33:32 -05:00
1a4511bb8d Merge pull request #3034 from akohlmey/mixing-info
Provide information about pair_coeff mixing and improve hybrid docs
2021-11-22 16:22:24 -05:00
ef2e51b344 whitespace fixes 2021-11-22 14:58:41 -05:00
6b605e932b Merge branch 'develop' into mixing-info 2021-11-22 14:58:19 -05:00
a83329a1a7 Merge pull request #3032 from GenieTim/compute-pair-distance-vector
Add dx, dy and dz computes to compute bond/local and property/local
2021-11-22 14:50:15 -05:00
f135d8bb4e Fix issue where direction correction in compute bond/local might not have been correct 2021-11-20 14:34:24 +01:00
b2dae36eb9 discuss mixing informational message 2021-11-19 14:36:00 -05:00
3d4b0121cb improve pair hybrid documentation with respect to mixing 2021-11-19 14:18:55 -05:00
23d40a1d61 report how many pair_coeff settings parameters were generated from mixing 2021-11-19 13:43:32 -05:00
74577fa584 Fix issue where direction correction in compute pair/local might not have been correct 2021-11-19 08:08:07 +01:00
4b6090a8cb Add direction consistency check to pair/local too 2021-11-18 19:28:51 +01:00
36e4e3e746 Add ddx, dy and dz computes to compute bond/local and property/local 2021-11-18 17:22:32 +01:00
229ce0a61b Merge pull request #3027 from yihengwuKP/fix-reorder-remd
Fix the indent and ot bugs in reorder_remd_traj.py
2021-11-17 14:11:12 -05:00
377b5b4ab3 Merge pull request #3020 from akohlmey/collected-small-changes
Collected small changes and fixes
2021-11-17 14:00:13 -05:00
ef30e3bd35 clarifications and corrections for the discussion of the main git branches 2021-11-17 06:58:44 -05:00
2b480f87f1 fix segfault when using atom style smd as part of a hybrid style
also remove redundant for clearing
2021-11-16 21:48:33 -05:00
d576b69dbc plug memory leaks 2021-11-16 21:41:08 -05:00
d0a4c4467f replace replicated functionality with shared code in base class 2021-11-16 13:53:52 -05:00
ed8c86d248 correct uninitialized data access bug due to shadowing of a base class member 2021-11-16 10:46:09 -05:00
1c1cd60baf Fix the indent and ot bugs in reorder_remd_traj.py 2021-11-15 18:21:17 -06:00
25db8a21bc account for increased floating point errors when summing numbers to zero 2021-11-07 08:29:16 -05:00
ac6654cf0c skip MPI tests if they would be oversubscribing the available processors 2021-11-07 08:28:16 -05:00
16c50b3873 whitespace 2021-11-07 08:27:25 -05:00
7c5640c1c9 we may call ->set_molecule() only in MOLECULE mode 2021-11-05 16:27:58 -04:00
49258e9301 add missing assignment 2021-11-05 16:19:19 -04:00
d1403c62c8 update restrictions note for dump_modify 2021-11-05 10:56:54 -04:00
a4ceda9706 Merge pull request #2940 from akohlmey/multi-config-support
Support multi-config builds with CMake
2021-11-04 15:21:58 -07:00
b3c5f6a4fd whitespace 2021-11-04 16:48:29 -04:00
935c17f02e Document multi-configuration build support in CMake 2021-11-04 16:32:21 -04:00
1a940e052e add support for and apply clang-format to lammps-shell code 2021-11-04 15:55:28 -04:00
aab4f71019 Merge branch 'develop' into multi-config-support
# Conflicts:
#	unittest/force-styles/test_error_stats.cpp
2021-11-04 15:50:49 -04:00
2cd862e4a2 Update lebedeva potential file and docs based on email on mailing list
https://matsci.org/t/lammps-users-webpage-and-parameter-file-for-the-lebedeva-potential/39059
2021-11-04 15:24:41 -04:00
8e89c7c654 correct unit description of eta_n0 parameters. fixes #3016 2021-11-04 15:24:41 -04:00
825945f783 mention that dump sorting is limited to less than 2 billion atoms 2021-11-04 15:24:41 -04:00
461a7afc22 remove PYTHON from "most" cmake preset.
The PYTHON package cannot be compiled without the python development
support being installed, so it must not be in the "most" preset
2021-11-04 15:24:41 -04:00
3ec3085f39 Merge pull request #3017 from akohlmey/portability-improvements
Portability improvements
2021-11-04 12:21:11 -07:00
7c80911f66 whitespace 2021-11-03 15:23:29 -04:00
439f997a10 skip test for file not readable due to permissions on windows 2021-11-03 14:54:38 -04:00
62fc7b6fa0 small tweaks to make replacing the CMakeLists.txt file work as expected 2021-11-03 14:44:16 -04:00
37dfc9e141 simplify by not trying to use fetchcontent but do all steps manually
as it turns out, fetchcontent is calling external_project internally at
some point which to avoid is why this function was started in the first place
2021-11-03 14:43:18 -04:00
b7bf60ea53 use the portable platform::unlink() instead of unlink() 2021-11-03 14:26:50 -04:00
35ff47411b Merge branch 'multi-config-support' of github.com:akohlmey/lammps into multi-config-support 2021-11-03 12:35:40 -04:00
7f0b2334a5 update plugin loader test 2021-11-03 11:52:32 -04:00
b95e12bb6c add additional function argument where we can supply our own CMakeLists.txt file 2021-11-03 11:50:39 -04:00
eb3f928f31 tweak epsilon for portability with windows 2021-11-03 10:54:40 -04:00
1ad982aa85 improve portability of unit test code for windows compilers 2021-11-03 10:54:21 -04:00
50f39cd752 implement and use a platform neutral abstraction of unsetenv(3) 2021-11-03 10:53:45 -04:00
a9c6f943e1 correct test comparisons 2021-11-02 23:07:44 -04:00