Commit Graph

23589 Commits

Author SHA1 Message Date
e3b8563ed9 correcting spelling errors 2020-10-05 21:28:26 -06:00
4baf60ffd1 adding examples of the biquadratic pair_style and offset option 2020-10-05 20:47:07 -06:00
3147dd850c adding corrections to doc page 2020-10-05 20:01:34 -06:00
2d7494186c rerun all validations tests (modifed one) 2020-10-05 19:37:24 -06:00
208bd10480 Merge branch 'exchange-biquadratic' of https://github.com/julient31/lammps into exchange-biquadratic 2020-10-05 17:14:26 -06:00
2825abb028 Improved scripts validaton problems 2020-10-05 17:13:54 -06:00
1cb0b9dece - modified all pairs (if on rcut)
- clean KOKKOS from atom spin/kk (other PR)
2020-10-05 17:11:53 -06:00
e95bab1994 Merge branch 'clean-master2' of github.com:julient31/lammps into exchange-biquadratic 2020-10-05 13:38:37 -06:00
0fb91ec755 Merge pull request #2408 from akohlmey/lammps-shell
Add a LAMMPS shell tool as alternative to the LAMMPS executable for interactive use
2020-10-05 14:42:23 -04:00
d9f7ddfd6d Merge pull request #2409 from mrcdr/math_eigen_impl
PR to relate "math_eigen_impl.h" with an author
2020-10-05 14:07:09 -04:00
6933233c56 add tests for the new library APIs 2020-10-05 13:43:11 -04:00
113db3ac73 fold group specific query functions into the more generic ID query functions 2020-10-05 13:41:12 -04:00
68cca6d31a make warning about lack of exception handling more specific 2020-10-05 12:51:42 -04:00
bd206dca10 simplify based on suggestions from @junghans 2020-10-05 11:44:19 -04:00
b6d333535c correct variable name 2020-10-05 11:43:43 -04:00
47e08f63ac Merge pull request #2406 from jrgissing/bond/react-rmsd_constraint_bugfix
bond/react: rmsd constraint bugfix
2020-10-05 10:43:21 -04:00
e08d905504 make a small change to math_eigen_impl.h 2020-10-05 22:32:15 +09:00
d500ffa784 implement handler for CTRL-C on windows. 2020-10-04 16:42:29 -04:00
f3b33ea0c6 address spelling issues 2020-10-04 14:10:35 -04:00
d1e76068e8 add new APIs to library docs 2020-10-04 14:10:18 -04:00
ffcd905bf1 complete LAMMPS shell docs interation. Warn if exceptions are missing but don't fail 2020-10-04 14:03:34 -04:00
e360219a8a add readme and makefile for LAMMPS shell 2020-10-04 12:28:01 -04:00
e71806196f ignore LAMMPS shell history files 2020-10-04 12:27:40 -04:00
cc14bae240 add LAMMPS shell to README 2020-10-04 12:22:37 -04:00
ecb5078ba7 add signal handler to smoothly interrupt ongoing runs. non-windows only. 2020-10-04 11:25:37 -04:00
f1ed6a9782 change word break characters to make direct variable expansion completion work 2020-10-04 11:25:05 -04:00
9353004e3e add APIs to determine of LAMMPS is running and to interrupt a run cleanly 2020-10-04 11:23:49 -04:00
2eb07f7427 add expansions of IDs and references to IDs 2020-10-04 06:02:14 -04:00
9dfb715296 add support for variable names to id introspection in library interface 2020-10-04 06:01:26 -04:00
b1cc9949e4 include added introspection into docs 2020-10-03 23:38:22 -04:00
1988e4c24c add introspection for various kinds of IDs 2020-10-03 23:38:02 -04:00
c5514c0a36 windows portability fix 2020-10-03 22:02:13 -04:00
4e8feff52c add support for building the LAMMPS shell in CMake 2020-10-03 22:01:57 -04:00
acf53ff55e add a few more context aware matcher functions 2020-10-03 12:26:40 -04:00
a2f7aae6db add API to query group names 2020-10-03 12:26:17 -04:00
01c85a3032 correct embedded docs 2020-10-03 12:25:56 -04:00
b231fa8a16 add completion for force style names 2020-10-03 11:32:56 -04:00
22cbac0b01 initial version of LAMMPS shell. without build system support (yet). 2020-10-03 09:49:35 -04:00
946a49662f bond/react: rmsd constraint bugfix
previously, eligible reactions could have been temporarily prevented, at the edge of the box, in serial
2020-10-02 18:43:35 -04:00
121dc82f1b Merge branch 'clean-master2' of https://github.com/julient31/lammps into exchange-biquadratic 2020-10-02 10:57:38 -06:00
84c104641b adding offset option and doc 2020-10-02 10:47:29 -06:00
51d55aa036 Merge pull request #2400 from akohlmey/code-analysis-fixes
A few more static code analysis fixes
2020-10-01 18:32:50 -04:00
2ea61b21f8 fix small memory leaks 2020-10-01 18:11:19 -04:00
48c45767f9 remove dead code 2020-10-01 18:11:08 -04:00
243a81e9d8 must initialize eflag_atom and vflag_atom to zero in constructor 2020-10-01 14:49:23 -04:00
b94df09570 Merge pull request #2398 from lammps/progguide-updates
Documentation updates plus a few small bugfixes
2020-10-01 11:11:28 -04:00
774ac8b2d9 avoid overflow of per-local-atom computation 2020-10-01 09:49:28 -04:00
4a40a70870 avoid overflow of timestep related computations 2020-10-01 09:48:54 -04:00
8c56f60939 use bigint instead of int for timestep related variable functions to avoid overflows 2020-10-01 09:35:45 -04:00
ea3af3c2bc resolve delete/free() mismatch 2020-10-01 09:34:38 -04:00