Commit Graph

33455 Commits

Author SHA1 Message Date
e4791356c7 Add regularization parameter to make the fitting more robust. 2022-12-02 10:29:46 -05:00
539f5b2fcb Merge pull request #11 from akohlmey/pod-updates
ML-POD updates
2022-12-01 23:34:31 -05:00
5b42b607d9 add precision parameter keyword to docs 2022-12-01 23:26:55 -05:00
7968c49916 rename old log and add logs for second example 2022-12-01 23:22:27 -05:00
8224e05515 simplify by making precision directly an integer 2022-12-01 23:19:38 -05:00
ef7b18cd34 remove dead code 2022-12-01 23:19:00 -05:00
7ec27b4c09 update logs and unit test 2022-12-01 23:18:41 -05:00
7063574d61 whitespace 2022-12-01 23:03:30 -05:00
b9a70c3998 update unit test 2022-12-01 22:59:58 -05:00
e79ae87957 Stabilize the linear solve and update Ta examples 2022-12-01 22:38:09 -05:00
99b5053991 Update log files 2022-12-01 16:07:22 -05:00
82375f75e4 Update reference log files 2022-12-01 15:53:26 -05:00
1228b89ece Add a quadratic pod example for Ta 2022-12-01 15:37:05 -05:00
3c9a6c4265 Fix white space 2022-12-01 14:42:24 -05:00
2738f18889 Add optional precision to round the coefficients to ensure consistency across platforms 2022-12-01 13:53:42 -05:00
196f16325c Update fitpod 2022-12-01 09:27:16 -05:00
db8b4af924 Merge branch 'pod' of https://github.com/cesmix-mit/lammps into pod 2022-12-01 09:18:18 -05:00
929f23095c Update fitpod to let proc 0 handle the linear system and broadcast the solution to other processors 2022-12-01 09:17:41 -05:00
d900c5adf0 Merge pull request #10 from akohlmey/pod-updates
More ML-POD updates
2022-12-01 09:09:46 -05:00
1d957d2c71 convert keyword lists in fitpod docs to proper tables 2022-12-01 08:49:54 -05:00
3792140734 prettify and simplify output table formatting using fmt::format() 2022-12-01 06:38:20 -05:00
1b40ff2a81 simplify 2022-12-01 06:38:20 -05:00
d7f16eb713 apply clang-format 2022-12-01 06:38:20 -05:00
587cfbeafe simplify. atom type to element mapping is checked in map_element2type() 2022-12-01 06:38:13 -05:00
8300d0865c correct name of pair style in error messages 2022-12-01 04:57:27 -05:00
52bd4ec9cf Merge pull request #9 from akohlmey/pod-updates 2022-11-30 23:52:06 -07:00
7cdb8a971a add false positive 2022-12-01 01:40:26 -05:00
a346d7c6ca truncate coefficient output to 8 digits precision that are reproducible 2022-12-01 01:12:26 -05:00
61c4953119 update log files 2022-12-01 00:55:29 -05:00
9523163300 update unittest 2022-12-01 00:53:05 -05:00
05669fd7ed whitespace 2022-12-01 00:32:13 -05:00
deb4684d26 Update README 2022-12-01 00:14:11 -05:00
bf07ccba77 Update documentation 2022-12-01 00:11:21 -05:00
fd13fe1e9a Add basename feature to output files and removed existing files 2022-11-30 22:34:42 -05:00
657054205d Merge pull request #8 from akohlmey/pod-updates
ML-POD updates
2022-11-30 21:44:27 -05:00
b7034e0380 update log files with updated coeff data 2022-11-30 21:27:01 -05:00
3333bdd5b9 update data without excess precision 2022-11-30 21:22:08 -05:00
264627daa6 programming style 2022-11-30 21:19:59 -05:00
d924d6bd17 plug one more memory leak 2022-11-30 21:19:46 -05:00
2a093e45ad Merge branch 'pod' into pod-updates 2022-11-30 21:07:58 -05:00
169d08fdf9 use new/delete for memory management in podstruct. add a destructor 2022-11-30 21:07:01 -05:00
8ba297fa64 Merge pull request #6 from akohlmey/pod-updates
ML-POD updates
2022-11-30 21:04:12 -05:00
d377a79f83 small style updates 2022-11-30 20:33:17 -05:00
cadffe7e8b rename fitpod command class to be consistent with rest of LAMMPS 2022-11-30 20:33:05 -05:00
2da2bf54b9 reduce memory leakage 2022-11-30 20:32:42 -05:00
d53701117b write to files only on MPI rank 0 2022-11-30 20:31:23 -05:00
736f545bad move install instructions for ML-POD into the correct place 2022-11-30 19:56:29 -05:00
4badeabd55 add versionadded tag 2022-11-30 19:56:02 -05:00
a52769f783 update README for potentials 2022-11-30 19:35:01 -05:00
1b29f1d351 remove dead code and fix typo 2022-11-30 19:26:59 -05:00