Commit Graph

24946 Commits

Author SHA1 Message Date
8c742fee3e Merge branch 'lammps-master' into bond-react_create_atoms
rebase
2021-02-04 14:59:26 -05:00
2bc2140ed9 Merge branch 'master' of https://github.com/lammps/lammps into lammps-master 2021-02-04 14:58:52 -05:00
11b2a1e1ac reorder package names to be in 2 groups (non-user, user) and each sorted alphabetically 2021-02-04 14:58:49 -05:00
3e07711739 simplify using C++11 syntax 2021-02-04 14:35:39 -05:00
dadea34663 reformat comment 2021-02-04 14:35:39 -05:00
5e29cba076 replace Get_Time() with MPI_Wtime() 2021-02-04 14:35:39 -05:00
95e2214d96 more typecasts to double to avoid 32-bit int overflows when computing memory usage 2021-02-04 14:35:38 -05:00
49ea762300 Merge pull request #2571 from akohlmey/arg-info-class
Add ArgInfo class for simpler processing of compute, fix, and variable references
2021-02-04 14:32:34 -05:00
de5ba601f2 Update fix_bond_react.rst
manual rebase
2021-02-04 13:41:58 -05:00
96f67ebeaa Merge pull request #2582 from ellio167/pair_kim_refactor
Small pair kim refactor to better support multiple run commands with different models
2021-02-04 13:27:06 -05:00
5256631bee test for correctly supporting the use of multiple calls to pair_style kim 2021-02-04 11:28:38 -06:00
302be3f946 Fix typo 2021-02-04 10:09:14 -06:00
8da3bc9144 Increment instance_me in pair_kim to ensure neighbor correct list updates 2021-02-04 09:47:29 -06:00
c9cf8b57f4 Fix behavor of a 2nd call to 'pair_style kim ...' & a bug for parameter changes 2021-02-04 09:45:08 -06:00
8574a417fb Merge pull request #2579 from lammps/fix-ti-spring-doc
Clarify one of the outputs of fix ti/spring
2021-02-04 05:50:35 -05:00
c6c9c82f96 ID strings are immutable, so make them const char * arguments 2021-02-03 21:13:54 -05:00
9f7dc78f86 convert a few more styles to use ArgInfo 2021-02-03 21:06:23 -05:00
9fa1688f39 small corrections for dump custom 2021-02-03 21:06:04 -05:00
04a46bfd99 Merge remote-tracking branch 'github/master' into arg-info-class 2021-02-03 17:43:49 -05:00
4b15ffcf14 more use of ArgInfo class 2021-02-03 17:43:39 -05:00
91d913b7ee Merge pull request #2576 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2021-02-03 17:08:04 -05:00
1ee27e2bc2 clarify one of the outputs of fix ti/spring 2021-02-03 15:01:35 -07:00
a700e506ae use utils::strmatch(name,"^x_") instead of (strstr(name,"x_") == name) 2021-02-03 16:50:19 -05:00
2f7d6672df more files with ArgInfo support added 2021-02-03 16:39:01 -05:00
f745d5d7be continue adding ArgInfo support 2021-02-03 10:52:16 -05:00
4eb143bfee fix another border communication issue in KOKKOS version of atom style dpd 2021-02-02 17:27:29 -05:00
e2e6639013 add typecast to avoid (unlikely but possible) integer overflows.
this will silence a lot of static code analysis warnings
2021-02-02 17:27:04 -05:00
5196926c28 remove meaningless typecast 2021-02-02 14:36:37 -05:00
1da3ba87f4 use -mpicolor flag as documented (and not -mpi). closes #2575 2021-02-02 14:12:46 -05:00
4404469f5c run GitHub actions only on merges/pushes to master to save minutes 2021-02-02 11:38:24 -05:00
85539765d0 update docs about thermo_modify flush 2021-02-02 11:37:08 -05:00
c2c8c5e493 Merge remote-tracking branch 'github/master' into arg-info-class
# Conflicts:
#	src/compute_chunk_atom.cpp
#	src/compute_chunk_spread_atom.cpp
#	src/compute_reduce.cpp
#	src/compute_reduce_region.cpp
#	src/compute_slice.cpp
#	src/fix_ave_atom.cpp
2021-02-02 11:33:01 -05:00
4d98d9f6aa add arginfo to fix saed/vtk 2021-02-02 11:29:08 -05:00
f2479e7d05 Merge pull request #2401 from lammps/configure-github-actions
Enable CodeQL static analysis and integration and unit tests on MacOS via GitHub actions
2021-02-02 10:27:25 -05:00
bfe64629fd switch to do CodeQL analysis and Unittest on MacOS. currently for PRs and master 2021-02-01 20:32:24 -05:00
6d836d8f30 run documentation actions in parallel 2021-02-01 20:32:24 -05:00
a83fe46860 spelling target needs conf.py 2021-02-01 20:32:19 -05:00
88e182da64 speed up compilation for static code analysis by switching to debug build type and turning off optimization 2021-02-01 20:31:37 -05:00
b15555724d combine analysis and simplify 2021-02-01 20:31:37 -05:00
0be1a419c7 split codeql workflow into two files as no compilation is needed for python 2021-02-01 20:31:37 -05:00
60a11b9ea1 do parallel compilation 2021-02-01 20:31:36 -05:00
c11bd658fc Add documentation and style check workflow 2021-02-01 20:31:36 -05:00
9ca0653c3e add CodeQL static code analysis workflow 2021-02-01 20:31:36 -05:00
1a7cb4647f Merge pull request #2569 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2021-02-01 20:18:48 -05:00
2ee701f719 also flush screen stdio buffer with thermo_modify flush yes 2021-02-01 18:43:42 -05:00
2b44d67128 consistent dependencies for targes in "doc" folder makefile 2021-02-01 18:13:00 -05:00
179fbe6172 Merge pull request #2572 from akohlmey/consistent-invoked
Move definition of INVOKED_* constants as enumerator to compute.h
2021-02-01 17:52:57 -05:00
9a419154fa whitespace 2021-02-01 10:15:06 -05:00
5c3b88d938 whitespace 2021-02-01 10:14:31 -05:00
0e9c44d155 IDs are immutable strings 2021-02-01 10:12:13 -05:00