Commit Graph

18224 Commits

Author SHA1 Message Date
e8d11931ec merged in current master 2020-01-13 10:34:31 -07:00
bf20d72fc3 Merge branch 'master' of https://github.com/lengxupa/lammps 2019-12-06 12:05:27 -05:00
38e82cbbcc This fix_deposit document added the description of the new rotation flag and its use. 2019-12-06 12:02:42 -05:00
877329c1e4 rename rflag to orientflag to be consistent with documentation and more readable 2019-10-08 16:35:50 +02:00
49cd88170f Merge branch 'master' of https://github.com/lengxupa/lammps 2019-10-02 15:52:45 -04:00
227a82e19f an update to the documentation in doc/src/fix_deposit.txt describing the orientation rx ry rz to restrict random rotation 2019-10-02 15:47:10 -04:00
a705b635a5 remove cstdio include
cstdio is implicitly included by pointers.h which is included by fix.h.
2019-09-25 14:36:26 -04:00
ff991c4c53 Added new keywords orientation rx ry rz to restrict random rotation 2019-09-24 15:10:47 -04:00
25c3a452f2 Added New keywords rotation rx ry rz to fix_deposit 2019-09-18 17:29:45 -04:00
572235e66a Merge pull request #1660 from tanmoy7989/reorder_remd_traj
python tool to reorder replica traj
2019-09-17 17:29:50 -04:00
28b634f20d some more whitespace cleanup 2019-09-17 16:10:32 -04:00
fd63b08f99 Merge branch 'reorder_remd_traj' of github.com:tanmoy7989/lammps into reorder_remd_traj
# Conflicts:
#	tools/replica/reorder_remd_traj.py
2019-09-17 16:09:13 -04:00
636a8aaef9 whitespace cleanup, mention pip install --user 2019-09-17 16:06:12 -04:00
fb7a439cd2 Merge pull request #1662 from akohlmey/hybrid-svector-fix
Fix bugs in handling of local pair property computes with hybrid pair styles
2019-09-17 08:21:15 -04:00
3e4f1d1cb8 replace tabs 2019-09-17 08:02:30 -04:00
f81c1aae26 Merge branch 'master' into hybrid-svector-fix 2019-09-16 22:28:48 -04:00
357ca4605c Merge pull request #1677 from athomps/update-steinhardt-example
Added log files and updated README
2019-09-16 21:11:55 -04:00
e51e25882b Merge branch 'master' to clear KOKKOS CI failures 2019-09-16 16:39:50 -04:00
d357259cc4 Merge pull request #1669 from stanmoore1/kk_ports
Port misc files to Kokkos
2019-09-16 16:35:55 -04:00
790d7d9fae Added log files and updated README 2019-09-13 15:59:25 -06:00
c1e7294b42 Merge branch 'master' into kk_ports 2019-09-13 12:30:53 -04:00
e8f94447f7 Merge branch 'master' into hybrid-svector-fix 2019-09-13 12:28:45 -04:00
d62ef0df82 add omitted cmake entries for recent KOKKOS package changes 2019-09-13 12:26:07 -04:00
4593e159ef update docs to indicate KOKKOS support for dihedral style harmonic 2019-09-13 12:25:23 -04:00
5a07db8465 tweak docs for dump_modify units command some more 2019-09-13 12:07:39 -04:00
ca301f040b add missing include for compiling with intel compilers without TBB 2019-09-13 09:47:02 -04:00
548fd40e9a make certain that nvalues class member is initialized 2019-09-13 09:15:39 -04:00
7386956dc5 remove misspelled word from false positives list 2019-09-13 08:52:09 -04:00
be0587eab5 Merge pull request #1670 from akohlmey/fix-rigid-nh-no-extended
Consolidate constants and enumerators across rigid fix styles
2019-09-13 08:04:16 -04:00
1f9decadf8 fix typo 2019-09-13 08:03:02 -04:00
fa164fffba explain new semantics for accessing pN for hybrid styles 2019-09-12 13:59:05 -04:00
1e0cd0b202 separate out svector handling to new virtual functions, so it can be handled differently for pair styles hybrid and hybrid/overlay 2019-09-12 12:30:22 -04:00
5d0c86be48 add omitted cmake entries for recent KOKKOS package changes 2019-09-12 07:33:22 -04:00
ce7c3e6864 Merge pull request #1648 from athomps/add_w_l_orientorder
Add w l orientorder
2019-09-11 14:08:33 -04:00
df63a53788 Merge pull request #1650 from stanmoore1/kk_minimize
Add Kokkos version of minimize
2019-09-11 14:04:47 -04:00
102db258bc Merge pull request #1667 from edwardsmith999/master
Adjusted compute_bond_local to allow components of force to be obtained.
2019-09-11 14:02:09 -04:00
07cda306a6 Merge pull request #1668 from stanmoore1/kk_hpe
Add support for HPE MPI to Kokkos package
2019-09-11 14:00:24 -04:00
d918b17ee7 Merge pull request #1664 from jrgissing/comm_modify-docs-tweak
Comm modify docs tweak
2019-09-11 13:58:17 -04:00
Ed
34f73fddfe Added a missing break statement in fz component 2019-09-11 11:59:59 +01:00
f34f133f7d bugfix for pair style lubricate when used with walls 2019-09-09 18:03:43 -04:00
cde16580c0 fixed alphabetical ordering in Tools.txt and added a line highlighting the tool in temper.txt 2019-09-09 14:15:05 -07:00
493f1cf65b correct overlapping definitions of bitmask flags 2019-09-09 15:33:56 -04:00
345d6cc7fe Compute pe doesn't touch atom data 2019-09-09 12:29:46 -06:00
fb0dee49a2 Small changes to base dihedral_harmonic class 2019-09-09 12:06:52 -06:00
c36c4d50cc Add Kokkos verison of dihedral_harmonic 2019-09-09 11:16:31 -06:00
51786a459f Add support for HPE MPI to Kokkos package 2019-09-09 10:14:30 -06:00
Ed
b08b3b90da Adjusted compute_bond_local to allow components of force to be obtained 2019-09-09 14:43:34 +01:00
91a1971977 added a line to tools/README and fixed the alphabetical ordering in docs 2019-09-09 02:04:59 -07:00
f41a1f8303 vectorized in parts and made changes as suggested by evoyiatzis 2019-09-08 10:43:22 -07:00
bbb0f5740e link to data.peptide was deleted by me by mistake. Now that it's re-added, I revoked (un-necessary) changes I made since to the in.peptide input script 2019-09-06 11:18:33 -07:00