20f8a8c219
Merge branch 'master' into github-tutorial-update
2017-01-09 14:38:09 +01:00
51e52b477a
remove obsolete warning about fix rigid image flag restrictions
2017-01-06 21:30:33 -05:00
20a4e365b7
reduce warning when processing manual with sphinx
2017-01-06 21:30:13 -05:00
51fa33a407
patch 6Jan17
2017-01-06 11:14:48 -07:00
ccd09e3967
Updated images of succesful merge.
2017-01-06 19:04:26 +01:00
142770cb2a
enable pppm/tip4p to work with triclinic
2017-01-06 10:38:32 -07:00
3ac58452de
Merge pull request #310 from EfremBraun/master
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Fix nvk implemented
2017-01-06 10:02:22 -07:00
9b348d567b
Merge pull request #315 from Pakketeretet2/github-tutorial-update
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GitHub tutorial update
2017-01-06 10:01:57 -07:00
41a6a3076e
Merge pull request #309 from giacomofiorin/colvars-2016-12-22
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Update Colvars library to version 2016-12-22
2017-01-06 09:58:20 -07:00
6af56e686d
polish the introduction, some more clarifications, corrections and formatting improvements
2017-01-06 08:31:02 -05:00
eb1c6a225c
typo fixed
2017-01-06 11:54:30 +01:00
4d0a6d83bd
Merged Axel's suggestions and updated text
2017-01-06 11:51:42 +01:00
958722573f
Merge branch 'github-tutorial-update' of https://github.com/Pakketeretet2/lammps into github-tutorial-update
2017-01-06 11:44:16 +01:00
9d46670972
Updated text and images on reverse pull requests
2017-01-06 11:44:14 +01:00
1a9f2df3d0
Updated text and images on reverse pull requests
2017-01-06 11:44:00 +01:00
fe14158c10
some formatting updates and text rewrites in the "do not use git add -a" section
2017-01-04 13:13:56 -05:00
0bcbcca140
Highlighted the assignee, maintainer changes, and mentioned LAMMPS collaborator
2017-01-04 17:28:22 +01:00
933b288ce9
Added explaination for assignee, changes pushed by others and collaborator.
2017-01-04 14:31:23 +01:00
4f45d39ac7
Add warning formatting
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Any paragraph starting with IMPORTANT NOTE: is transformed into a warning.
2017-01-03 02:34:11 +01:00
7d057d4c83
make it more explicit, that master needs to be updated and feature branches should be created from master
2017-01-02 13:02:48 -05:00
4f096dbad5
Updated some inconsistent text.
2017-01-02 18:53:28 +01:00
18b12efc9f
Small changes to tutorial text.
2017-01-02 18:25:36 +01:00
2c7fea1e0d
Second update round to text and images, a third will follow after succesful merge.
2017-01-02 18:15:08 +01:00
4d98bbdfa5
Almost done with the tutorial now
2017-01-02 18:08:14 +01:00
391ab761a4
Finally updated the github tutorial.
2017-01-02 17:55:02 +01:00
aa146e9b38
Moved fix_nvk to USER-MISC, updated documentation to reflect move
2016-12-28 19:06:35 +01:00
68814d4fc8
Made documentation changes to fix nvk
2016-12-28 16:26:05 +01:00
616ca1de03
Fix nvk implemented.
2016-12-28 16:17:07 +01:00
925f42727f
Fix typo
2016-12-27 14:26:43 -05:00
f553e230db
Update Colvars library to version 2016-12-22
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Significant code cleanup and several fixes (walls + extended Lagrangian)
New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
2016-12-27 13:17:34 -05:00
781daad2a0
USER-DPD: update documentation for changes in commit 3faa57
2016-12-22 17:31:17 -05:00
62dea1bb63
21Dec16 patch
2016-12-21 09:53:32 -07:00
81a2db8a0c
17Dec16 patch
2016-12-16 11:36:54 -07:00
3027ac9250
patch 16Dec16
2016-12-16 10:30:57 -07:00
e364b80724
added length keyword to python command
2016-12-16 10:24:25 -07:00
f509f133af
patch 13Dec16: neighbor refactor, Stan pppm/disp bug fix, M Brown INTEL package updates
2016-12-13 17:14:28 -07:00
f3b355bcbe
Merge pull request #298 from akohlmey/collected-small-fixes
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Collected small fixes
2016-12-13 16:23:23 -07:00
ae5764beac
added functionity to lib interface
2016-12-13 16:22:17 -07:00
ddf678da51
make fix gcmc command overview consistent
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this closes #296
2016-12-09 14:30:27 -05:00
d3d5ac17bf
Fixed small typos in doc
2016-12-07 19:37:51 -08:00
fb3f597f41
30Nov16 patch
2016-11-30 14:04:41 -07:00
d14814ae2e
Merge pull request #289 from akohlmey/collected-updates-and-bugfixes
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Collected updates and bugfixes
2016-11-30 14:02:41 -07:00
beb5a30f67
new compute global/atom command, also bug fix for descending dump sorts
2016-11-30 14:01:27 -07:00
42d430168b
fix typo in compute cluster/atom docs
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this closes #292
2016-11-29 07:24:09 -05:00
02ae2d218a
correct broken link to USER-SMD docs PDF
2016-11-28 11:34:22 -05:00
87781771ba
fix typo and USER-OMP support omission
2016-11-23 09:02:32 -05:00
59d100ab57
final prep for 22Nov patch
2016-11-22 09:23:02 -07:00
b6f2f0e6e9
Merge pull request #287 from rbberger/pylammps/docs
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Created PyLammps documentation
2016-11-22 08:50:29 -07:00
ff0441ac16
Merge pull request #286 from akohlmey/small-fixes-and-updates
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Collected small fixes and updates
2016-11-22 08:49:46 -07:00
41907d3110
Merge pull request #285 from akohlmey/fix-ipi-update
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update for fix ipi from michele ceriotti
2016-11-22 08:48:27 -07:00
