Commit Graph

21937 Commits

Author SHA1 Message Date
ea5015c630 more OpenMPI suppressions 2020-07-09 00:05:18 -04:00
d0cfb0ccae fix initialition issue 2020-07-08 23:49:18 -04:00
e18a11d6bd ewald_order needs to be saved in restart 2020-07-08 23:48:58 -04:00
bebd10712a fix memory leak in pair style sw/intel for good 2020-07-08 22:04:55 -04:00
909bc5a801 fix typo 2020-07-08 21:35:54 -04:00
7ee73e44ad will need ellipsoid field in restart file 2020-07-08 21:18:09 -04:00
4da8ec39de complete testing ellipsoids short of having restart support. 2020-07-08 21:13:28 -04:00
ecc5d3e353 must copy/multiply the numbers of ellipsoids,lines,tris,bodies 2020-07-08 21:12:29 -04:00
7071cff481 avoid memory leak in pair style sw/intel 2020-07-08 20:11:17 -04:00
240c33b503 some more OpenMPI suppressions 2020-07-08 20:10:52 -04:00
f59e391713 avoid leaking empty allocations 2020-07-08 20:10:40 -04:00
2016333cf0 use fmtlib for writing data file coefficients. use mixed coefficients for PairIJCoeffs 2020-07-08 20:09:23 -04:00
7591343702 several fixes to address issues detected by valgrind
- make sure g_ewald_6 is not accessed uninitialized
- fix memory leak
- do not override g_ewald_6 if it is explicitly set
2020-07-08 20:07:54 -04:00
5918d9e6c7 avoid googletest stalling on exit tests when using OpenMPI 2020-07-08 16:31:36 -04:00
bda245339e avoid illegal free() 2020-07-08 16:29:40 -04:00
6cd2c8d117 synchronize exception based and non-exception based code paths 2020-07-08 10:18:01 -04:00
d6665aba99 refactor tester 2020-07-08 10:08:00 -04:00
a43428fd1b use auto to simplify 2020-07-07 22:19:07 -04:00
cd739c2782 silence compiler warnings 2020-07-07 22:18:52 -04:00
1898fae3f6 simplify 2020-07-07 22:18:37 -04:00
5cef86d7b7 add missing MPI call 2020-07-07 21:37:33 -04:00
8fbc8a7148 make more use of fmtlib and replace fprintf with fputs where possible 2020-07-07 21:34:34 -04:00
c0f1472385 use parenthesis to correct precedence 2020-07-07 21:21:32 -04:00
6e3e13f2a8 remove unused variable 2020-07-07 20:53:50 -04:00
9a268da7de remove unneeded typecasts and use fmt::print() instead of fprintf() 2020-07-07 20:53:42 -04:00
4c67822e6b remove unneeded typecasts 2020-07-07 20:27:01 -04:00
e459ee8a58 whitespace fixes 2020-07-07 20:25:59 -04:00
88fc9360c0 resolve conflicts 2020-07-07 11:46:05 -06:00
955bff7c4e add body support, change bonus buf to 1d so can be variable length 2020-07-07 11:34:30 -06:00
7e140399db add (initial) testing for ellipsoid atom style 2020-07-07 12:36:17 -04:00
f16c6f40a7 shape is converted from diameter to radius, so we have to scale back on writing 2020-07-07 12:24:04 -04:00
94d98b6aea no typecasts needed when outputting ubuf integers with fmtlib auto format 2020-07-07 11:40:01 -04:00
bdac1ae3e7 add missing return statements 2020-07-07 11:14:52 -04:00
169206790a small tweak 2020-07-07 10:29:43 -04:00
7918919d30 enable write_data for atom styles with bonus data 2020-07-06 17:30:45 -06:00
6bf329098e Merge pull request #2216 from ndtrung81/tersoff-gpu
Cleanup and bugfixes for some 3-body pair styles in the GPU package
2020-07-06 13:35:12 -04:00
9e96b71703 Merge pull request #2214 from akohlmey/kspace-tests
Add unit tests for some kspace styles and more pair styles
2020-07-06 12:48:09 -04:00
2977a8aa15 Merge pull request #2211 from athomps/compute-mliap
Add compute style mliap to MLIAP package
2020-07-06 12:47:41 -04:00
d1b5b0a168 Merge pull request #2210 from ohenrich/user-cgdna
Update of example input and log files
2020-07-06 12:47:09 -04:00
d768069cfe Merge pull request #2205 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-07-06 12:46:16 -04:00
5d0800beef Merge pull request #2204 from rbberger/doc-changes
Documentation Changes: split pair_lj.rst
2020-07-06 12:19:06 -04:00
9ec72d1406 add tests for unknown commands, quit, and reset_timestep 2020-07-06 10:26:04 -04:00
f1abfe2411 avoid segfault when calling the log command without arguments 2020-07-06 10:25:37 -04:00
461633e6f6 add unit tests for the suffix, thermo, and timestep commands 2020-07-06 00:11:13 -04:00
83d58ba57d we may not use "suffix on" before a suffix is defined. switching back to a non-hybrid suffix must set suffix2 to NULL 2020-07-06 00:10:43 -04:00
1df59c4b95 change lammps2pdb.pl to only ignore the first line of a data file. whitespace fixes 2020-07-05 23:36:00 -04:00
fe12ea2734 simplify compute creation 2020-07-05 22:46:48 -04:00
134a2e8dd6 use fmtlib and utils::logmesg() in fix msst 2020-07-05 22:37:59 -04:00
759797733d Generalized the variable and function names 2020-07-05 18:58:32 -06:00
a0157f8063 use fmtlib consistently when writing data files 2020-07-05 17:16:58 -04:00