Commit Graph

17630 Commits

Author SHA1 Message Date
ebbed707c6 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-08-21 11:00:54 -04:00
2fff78a78e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15484 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:43:04 +00:00
d4891754c8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15483 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:42:24 +00:00
ccf8cf20b3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15482 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:42:17 +00:00
6ccf4b4525 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15481 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:41:29 +00:00
bfba361f65 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15480 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:22:00 +00:00
579c527718 fix indexing bugs in accessing compute and fix labels in fix ave/histo 2016-08-16 23:54:56 -04:00
b745636a67 thread timing summare needs to be marked as preformatted 2016-08-14 22:01:32 -04:00
27d36f3f14 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-08-14 06:15:09 -04:00
b1829c107c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15479 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 15:03:16 +00:00
ac6f4f8a56 correct small (but harmless) logic error. 2016-08-13 10:53:29 -04:00
832f6a9f11 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15475 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 14:52:15 +00:00
6503590875 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15474 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 14:51:00 +00:00
2c9eef57d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15473 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 14:49:57 +00:00
eba3ad9abb update colvars to version 2016-08-10 2016-08-13 07:24:26 -04:00
e338a2f386 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-08-13 06:54:59 -04:00
60bf26bad9 silence warnings about cases, that cannot happen 2016-08-13 01:59:27 -04:00
63b41cb139 fix bug found by coverity scan 2016-08-13 01:58:37 -04:00
c03252f08d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15471 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-12 14:34:16 +00:00
ff933712b7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15470 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-12 14:33:36 +00:00
112c98159b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15469 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-12 13:49:50 +00:00
20e0ae3645 adapt input to no longer fail with recent thermo changes 2016-08-11 18:14:23 -04:00
bc7c97b882 remove duplicated statement 2016-08-11 07:30:10 -04:00
c6ef337b2e Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-08-11 07:28:45 -04:00
2b052c2a9c improve the weight assignment algorithm for compute time based balancing 2016-08-10 20:52:49 -04:00
433741564d add run 0 to USER-TALLY examples to enforce shake constraints on step 0 2016-08-10 20:25:44 -04:00
ea4655d5e5 Merge branch 'merge-pull-134' into lammps-icms
improvements of extended python wrapper for use at the upcoming LAMMPS tutorial
2016-08-10 15:52:19 -04:00
7abc52d4cf Merge branch 'python_interface_enhancements' of https://github.com/rbberger/lammps into merge-pull-134 2016-08-10 15:50:39 -04:00
57d7a4a6ad Add utility function to IPyLammps for embedding videos 2016-08-10 14:35:48 -04:00
054b1cedb0 Add verbose option in PyLammps methods
This option allows forcing LAMMPS output to be printed to the console.
2016-08-10 14:31:17 -04:00
639ea6c396 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15468 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-10 14:59:04 +00:00
b3364ae943 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15467 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-10 14:46:16 +00:00
cb816f8cba update colvars to another set of changes from the upstream repo 2016-08-10 09:35:21 -04:00
df99a85930 update colvars makefile dependencies 2016-08-10 09:13:08 -04:00
6f227e194e suppress compiler warning 2016-08-10 09:12:51 -04:00
f2ddf828e4 update colvars to version 2016-08-10 2016-08-10 09:03:25 -04:00
aef16fed2a Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-08-10 07:26:12 -04:00
3eba86e650 builtins module doesn't seem to exist in some older python 2.x installations. try without. 2016-08-09 20:57:28 -04:00
791e56039c Merge branch 'merge-pull-133' into lammps-icms
From Richard Berger:
updates for python wrapper
2016-08-09 19:40:22 -04:00
77ce967888 Merge branch 'python_interface_enhancements' of https://github.com/rbberger/lammps into merge-pull-133 2016-08-09 19:36:24 -04:00
3349f7e143 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15466 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-09 23:25:06 +00:00
0ab96350f0 python2/3 portability changes suggested by futurize -1 2016-08-09 18:36:29 -04:00
de2b6cf6bd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15465 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-09 20:45:02 +00:00
ae3f4173c0 apply changes suggested by futurize -1 -2 for improved python 2/3 compatibility 2016-08-09 16:04:17 -04:00
8d2fc6b14f perform stage 2 of python2/3 compatibility conversion with futurize 2016-08-09 16:00:28 -04:00
2495bee1d8 process with futurize -1 to increase its portability. 2016-08-09 15:50:41 -04:00
ad652c9b82 port changes to lj/sf/dipole/sf to lj/sf/dipole/sf/omp 2016-08-09 10:30:43 -04:00
0369d79c39 change pair_coeff syntax for lj/sf/dipole/sf to be backward compatible and trigger error when using an old executable
also print warning about incomplete single() method, when used
2016-08-09 10:28:16 -04:00
6c8d3ed4e8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15463 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-09 14:10:55 +00:00
ae691ab786 import updated pair lj/sf/dipole/sf files from sam genheden 2016-08-09 09:33:15 -04:00